Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.4e-212 742.7 367 100.0
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 3.5e-195 684.9 367 93.7
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.3e-194 682.9 367 93.5
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.2e-194 682.2 367 93.2
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.4e-190 667.9 363 92.3
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.3e-189 664.1 375 89.6
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 2.2e-181 639.0 362 87.8
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 1.1e-180 636.7 359 88.9
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 2.3e-178 629.0 367 86.1
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 1.6e-168 596.3 362 79.3
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 3.6e-168 595.1 360 79.7
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 8.0e-168 594.0 349 81.7
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 1.8e-167 592.8 358 80.2
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 3.1e-167 592.0 358 80.2
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 8.9e-167 590.5 360 80.3
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.5e-166 589.7 354 81.1
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 2.0e-166 589.3 357 80.7
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 4.4e-166 588.2 359 79.9
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 5.8e-166 587.8 352 81.5
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 5.8e-166 587.8 346 83.5
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 7.5e-166 587.4 349 81.4
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 9.8e-166 587.0 348 82.8
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 9.8e-166 587.0 353 80.7
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.2e-165 585.9 346 83.2
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 8.3e-165 583.9 346 82.7
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 1.1e-164 583.6 349 79.9
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.1e-164 583.6 362 78.7
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 1.1e-164 583.6 354 79.9
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 1.4e-164 583.2 353 80.2
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.4e-164 582.4 348 82.5
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 4.1e-164 581.6 352 81.2
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 2.0e-163 579.3 361 77.3
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 2.0e-163 579.3 358 78.2
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 2.7e-163 578.9 351 79.8
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.3e-162 576.6 358 78.5
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.3e-162 575.9 355 78.3
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 5.0e-162 574.7 347 80.4
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 6.6e-162 574.3 350 78.6
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 8.6e-162 573.9 351 78.3
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 8.6e-162 573.9 353 77.3
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.5e-161 573.2 360 76.9
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.9e-161 572.8 355 78.9
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 3.3e-161 572.0 347 78.7
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 4.3e-161 571.6 347 79.8
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 4.3e-161 571.6 360 75.3
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 4.7e-160 568.2 351 78.9
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 8.1e-160 567.4 367 75.7
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.1e-159 567.0 348 78.2
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.1e-159 567.0 367 75.2
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.8e-159 566.2 367 75.2
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.8e-159 566.2 361 76.5
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 2.3e-159 565.8 361 75.3
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 4.0e-159 565.1 352 77.6
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.5e-158 563.1 347 78.4
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.6e-158 562.4 348 77.6
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 3.4e-158 562.0 357 74.8
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.4e-158 562.0 366 74.0
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 5.8e-158 561.2 349 78.2
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 9.8e-158 560.5 362 76.0
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.7e-157 559.7 346 78.6
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 2.2e-157 559.3 346 78.6
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 3.7e-157 558.5 348 76.4
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-156 557.0 357 74.5
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.9e-156 556.2 349 76.2
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.4e-156 555.8 350 76.9
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 3.2e-156 555.4 348 76.1
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 7.1e-156 554.3 357 73.9
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 3.5e-155 552.0 362 75.4
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 7.8e-155 550.8 355 76.1
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 1.0e-154 550.4 356 73.0
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.3e-154 550.1 360 74.2
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 5.1e-154 548.1 342 76.6
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 8.6e-154 547.4 366 73.2
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 1.5e-153 546.6 346 75.4
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 3.3e-153 545.4 343 76.7
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 5.6e-153 544.7 351 74.9
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 7.3e-153 544.3 352 74.4
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 9.5e-153 543.9 336 78.0
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 9.5e-153 543.9 349 73.9
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 2.1e-152 542.7 347 74.9
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 2.8e-152 542.3 360 74.2
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 8.1e-152 540.8 361 72.0
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.1e-151 540.4 359 72.7
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 1.4e-151 540.0 350 75.1
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 2.3e-151 539.3 353 73.1
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 2.3e-151 539.3 346 76.0
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.1e-151 538.9 349 73.6
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 6.8e-151 537.7 364 72.0
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 8.9e-151 537.3 362 72.1
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 1.5e-150 536.6 396 69.7
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.5e-150 536.6 351 74.4
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 7.6e-150 534.3 361 70.9
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.3e-149 533.5 352 74.1
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 2.9e-149 532.3 367 70.8
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 8.4e-149 530.8 364 70.9
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.4e-148 529.3 350 72.3
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 7.1e-148 527.7 351 72.6
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 9.2e-148 527.3 351 73.2
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 6.0e-147 524.6 347 72.9
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 6.0e-147 524.6 346 73.1
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.7e-146 523.1 340 75.0
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 2.5e-145 519.2 313 80.8
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 3.3e-145 518.8 356 73.9
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.4e-143 513.5 387 65.6
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.7e-141 506.5 369 69.1
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 3.5e-139 498.8 367 68.4
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.5e-137 493.4 373 67.3
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 1.4e-132 476.9 354 67.8
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.2e-131 473.8 343 65.9
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 9.6e-129 464.2 287 79.1
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 3.1e-127 459.1 365 63.3
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.2e-126 457.2 281 77.9
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.7e-125 453.4 350 67.7
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 2.9e-125 452.6 334 65.9
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 4.9e-125 451.8 275 80.4
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 1.1e-121 440.7 268 79.1
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 5.8e-118 428.3 268 77.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 5.8e-118 428.3 269 77.0
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.8e-114 416.8 269 74.3
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.1e-112 409.8 302 65.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.1e-111 407.5 341 61.3
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.3e-109 400.6 340 59.7
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 1.6e-107 393.7 336 62.8
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 2.3e-106 389.8 238 79.0
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.2e-102 377.5 268 67.2
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.2e-99 367.5 249 72.3
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 2.7e-99 366.3 283 63.3
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 9.7e-97 357.8 366 53.0
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.3e-96 357.5 375 52.8
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.0e-93 347.8 351 55.6
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 6.1e-91 338.6 358 53.4
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 3.5e-86 322.8 204 74.0
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 3.8e-85 319.3 350 49.7
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 4.8e-80 302.4 345 49.6
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.5e-78 296.2 234 67.9
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-70 271.2 209 68.9
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 7.5e-65 251.9 167 71.9
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.3e-61 241.1 228 56.6
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 4.6e-54 216.1 196 58.2
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 7.3e-52 208.8 131 77.1
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 3.2e-47 193.4 113 78.8
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 6.8e-34 149.1 114 64.9
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 3.9e-29 133.3 87 77.0
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 4.3e-28 129.8 189 43.4
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 2.9e-24 117.1 70 75.7
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 2.1e-19 100.9 66 72.7
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.8e-18 97.8 63 71.4
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 1.2e-09 68.6 44 68.2
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 9.9e-09 65.5 43 65.1
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 1.4e-07 61.6 81 46.9


User provided reference genes

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