Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171761 Rosa chinensis HOM05D005049 ORTHO05D006032 2.9e-34 147.9 69 100.0
RcHm_v2.0_Chr2g0171441 Rosa chinensis HOM05D005049 ORTHO05D006032 2.1e-13 78.6 48 72.9
FvH4_6g50640 Fragaria vesca HOM05D005049 ORTHO05D006032 2.2e-10 68.6 48 60.4
FAN14G5348 Fragaria x ananassa HOM05D005049 ORTHO05D006032 2.2e-10 68.6 48 60.4
Prupe.6G347800 Prunus persica HOM05D005049 ORTHO05D006032 4.9e-10 67.4 48 62.5
Prupe.3G284100 Prunus persica HOM05D005049 ORTHO05D006032 1.9e-09 65.5 48 54.2
MD09G1034200 Malus domestica HOM05D005049 ORTHO05D006032 4.2e-09 64.3 48 54.2
TAR622G0573 Trochodendron aralioides HOM05D005049 ORTHO05D006032 9.3e-09 63.2 48 52.1
MD17G1034700 Malus domestica HOM05D005049 ORTHO05D006032 2.1e-08 62.0 48 54.2
Thecc.04G008900 Theobroma cacao HOM05D005049 ORTHO05D006032 4.6e-08 60.8 59 47.5
Cfa007428 Carpinus fangiana HOM05D005049 ORTHO05D006032 6.0e-08 60.5 59 42.4
Medtr6g007165 Medicago truncatula HOM05D005049 ORTHO05D006032 6.0e-08 60.5 51 51.0
Ca_04197_v3 Cicer arietinum L. HOM05D005049 ORTHO05D006032 1.3e-07 59.3 48 54.2
Haze_14669 Corylus avellana HOM05D005049 ORTHO05D006032 1.3e-07 59.3 59 42.4
Glyma.06G185500 Glycine max HOM05D005049 ORTHO05D006032 2.3e-07 58.5 48 54.2
GSVIVG01032478001 Vitis vinifera HOM05D005049 ORTHO05D006032 2.3e-07 58.5 51 47.1
CiPaw.03G037900 Carya illinoinensis HOM05D005049 ORTHO05D006032 3.0e-07 58.2 51 47.1
arahy.Tifrunner.gnm1.ann1.41NV30 Arachis hypogaea HOM05D005049 ORTHO05D006032 3.9e-07 57.8 48 54.2
arahy.Tifrunner.gnm1.ann1.B7LRKU Arachis hypogaea HOM05D005049 ORTHO05D006032 3.9e-07 57.8 48 54.2
arahy.Tifrunner.gnm1.ann1.EYLE23 Arachis hypogaea HOM05D005049 ORTHO05D006032 3.9e-07 57.8 48 54.2
Lalb_Chr02g0160341 Lupinus albus HOM05D005049 ORTHO05D006032 3.9e-07 57.8 48 54.2
Rhsim10G0022300 Rhododendron simsii HOM05D005049 ORTHO05D006032 3.9e-07 57.8 60 38.3
CSS0003936 Camellia sinensis var. sinensis HOM05D005049 ORTHO05D006032 5.1e-07 57.4 51 45.1
Hma1.2p1_0858F.1_g229450 Hydrangea macrophylla HOM05D005049 ORTHO05D006032 5.1e-07 57.4 51 43.1
Lj9C583G13 Lonicera japonica HOM05D005049 ORTHO05D006032 5.1e-07 57.4 53 50.9
Duzib264G0847 Durio zibethinus HOM05D005049 ORTHO05D006032 6.7e-07 57.0 51 49.0
Nn4g22794 Nelumbo nucifera HOM05D005049 ORTHO05D006032 6.7e-07 57.0 51 45.1
Potri.017G073200 Populus trichocarpa HOM05D005049 ORTHO05D006032 6.7e-07 57.0 42 54.8
Glyma.13G168600 Glycine max HOM05D005049 ORTHO05D006032 8.7e-07 56.6 47 53.2
Manes.17G121600 Manihot esculenta HOM05D005049 ORTHO05D006032 8.7e-07 56.6 41 53.7
Phvul.004G014500 Phaseolus vulgaris HOM05D005049 ORTHO05D006032 8.7e-07 56.6 47 53.2
Psat1g056840 Pisum sativum HOM05D005049 ORTHO05D006032 8.7e-07 56.6 48 50.0
VMungo0464G1607 Vigna mungo HOM05D005049 ORTHO05D006032 8.7e-07 56.6 47 53.2
EL10Ac2g02398 Beta vulgaris HOM05D005049 ORTHO05D006032 1.1e-06 56.2 49 46.9
Gohir.A09G026200 Gossypium hirsutum HOM05D005049 ORTHO05D006032 1.1e-06 56.2 53 45.3
Gohir.D09G025601 Gossypium hirsutum HOM05D005049 ORTHO05D006032 1.1e-06 56.2 53 45.3
Gorai.006G029800 Gossypium raimondii HOM05D005049 ORTHO05D006032 1.1e-06 56.2 53 45.3
MBI16_g40725_MAGBIO Magnolia biondii HOM05D005049 ORTHO05D006032 1.1e-06 56.2 48 50.0
Manes.17G121264 Manihot esculenta HOM05D005049 ORTHO05D006032 1.1e-06 56.2 41 53.7
Oeu004708.3 Olea europaea HOM05D005049 ORTHO05D006032 1.1e-06 56.2 48 54.2
PSO478G2829 Papaver somniferum HOM05D005049 ORTHO05D006032 1.1e-06 56.2 49 46.9
AUR62040116 Chenopodium quinoa HOM05D005049 ORTHO05D006032 1.5e-06 55.8 51 47.1
Dinv35060 Davidia involucrata HOM05D005049 ORTHO05D006032 1.5e-06 55.8 51 47.1
TWI12G0306 Tripterygium wilfordii HOM05D005049 ORTHO05D006032 1.5e-06 55.8 55 40.0
Hund02271 Selenicereus undatus HOM05D005049 ORTHO05D006032 1.9e-06 55.5 51 47.1
TPR.G2274 Trifolium pratense HOM05D005049 ORTHO05D006032 1.9e-06 55.5 48 47.9
Actinidia35742 Actinidia chinensis HOM05D005049 ORTHO05D006032 2.5e-06 55.1 59 39.0
Lj2g0009991 Lotus japonicus HOM05D005049 ORTHO05D006032 2.5e-06 55.1 48 50.0
QL02p076639 Quercus lobata HOM05D005049 ORTHO05D006032 2.5e-06 55.1 59 40.7
Aqoxy3G01017 Aquilegia oxysepala HOM05D005049 ORTHO05D006032 3.3e-06 54.7 51 43.1
PSO017G6025 Papaver somniferum HOM05D005049 ORTHO05D006032 3.3e-06 54.7 49 44.9
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 4.3e-06 54.3 59 37.3
Cpa.g.sc39.89 Carica papaya HOM05D005049 ORTHO05D006032 4.3e-06 54.3 50 48.0
AUR62032496 Chenopodium quinoa HOM05D005049 ORTHO05D006032 4.3e-06 54.3 51 45.1
Nitab4.5_0005176g0050 Nicotiana tabacum HOM05D005049 ORTHO05D006032 4.3e-06 54.3 70 38.6
COL.COLO4_28950 Corchorus olitorius HOM05D005049 ORTHO05D006032 5.6e-06 53.9 57 43.9
Duzib147G1079 Durio zibethinus HOM05D005049 ORTHO05D006032 7.4e-06 53.5 51 45.1
Nitab4.5_0003337g0090 Nicotiana tabacum HOM05D005049 ORTHO05D006032 7.4e-06 53.5 48 45.8


User provided reference genes

Program Settings