Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.8e-259 898.7 439 100.0
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.6e-245 851.7 440 93.0
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.3e-244 849.4 440 92.7
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.7e-244 847.8 440 92.7
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.2e-222 774.2 495 78.8
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.6e-221 771.9 439 84.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.7e-218 761.9 448 81.7
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.8e-206 722.6 439 78.4
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.1e-206 721.8 439 77.2
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 5.2e-206 721.1 439 77.0
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 1.2e-205 719.9 439 77.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.5e-205 719.5 439 78.1
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 2.2e-204 715.7 449 79.5
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 3.7e-204 714.9 439 77.2
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.1e-203 713.4 437 77.6
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 5.4e-203 711.1 439 76.1
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 6.0e-202 707.6 441 76.4
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.0e-201 706.8 439 77.0
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 3.9e-201 704.9 439 75.6
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 5.1e-201 704.5 441 76.2
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.1e-200 703.4 438 76.3
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.3e-200 701.8 439 76.5
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.3e-200 701.4 442 75.8
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.2e-199 699.9 433 76.9
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 2.8e-199 698.7 441 75.3
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.8e-198 696.0 441 75.1
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 5.2e-198 694.5 441 74.6
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 6.8e-198 694.1 442 76.5
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 8.9e-198 693.7 432 76.4
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.2e-197 693.3 439 73.8
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.5e-197 693.0 446 74.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.0e-197 692.6 441 76.0
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.4e-197 691.4 434 76.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 4.4e-197 691.4 441 74.8
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 7.5e-197 690.6 441 75.1
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 3.7e-196 688.3 441 74.6
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.2e-195 685.3 440 74.3
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 3.2e-195 685.3 439 74.0
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 7.1e-195 684.1 439 72.9
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 4.6e-194 681.4 442 74.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.5e-192 675.6 439 72.4
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 6.2e-191 671.0 439 72.0
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 3.4e-189 665.2 439 72.7
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.8e-188 661.8 491 66.2
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 8.4e-188 660.6 403 78.4
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 9.2e-187 657.1 441 72.1
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.2e-186 656.8 463 69.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.1e-186 656.0 443 71.3
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 7.8e-186 654.1 431 71.0
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 3.9e-185 651.7 440 70.5
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.5e-184 649.8 438 71.7
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.9e-184 649.4 433 72.1
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.6e-183 646.4 441 71.0
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 2.8e-183 645.6 407 74.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 8.1e-183 644.0 438 71.5
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-182 643.7 441 68.7
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.5e-181 639.8 442 70.1
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.8e-181 637.9 438 68.5
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.2e-180 636.0 441 70.3
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.9e-180 635.6 432 71.3
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-179 633.6 427 69.6
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 4.2e-179 631.7 441 69.2
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 7.1e-179 630.9 441 70.1
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 9.3e-179 630.6 439 70.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.0e-177 625.5 439 69.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 6.6e-177 624.4 438 68.3
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 3.3e-176 622.1 441 69.2
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 3.3e-176 622.1 441 69.2
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 4.3e-176 621.7 442 69.2
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.6e-176 620.5 409 72.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 8.1e-175 617.5 461 66.6
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 1.4e-174 616.7 440 69.1
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 5.8e-173 611.3 409 70.9
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.9e-172 609.0 428 68.2
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 6.4e-172 607.8 440 68.6
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 7.1e-171 604.4 438 67.4
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.6e-170 603.2 445 67.0
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.7e-170 602.4 441 67.8
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.6e-170 601.7 410 70.2
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.1e-169 598.2 441 66.9
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 8.7e-169 597.4 433 67.9
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 4.3e-168 595.1 409 68.7
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.6e-167 593.2 443 65.2
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 9.0e-166 587.4 443 65.9
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 4.5e-165 585.1 488 60.7
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 6.4e-164 581.3 385 73.8
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.9e-163 579.7 441 63.7
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.0e-161 572.4 439 63.3
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.2e-156 556.2 440 60.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 8.4e-156 554.3 386 71.0
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 5.5e-155 551.6 439 62.4
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.8e-153 546.6 475 61.3
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.1e-150 537.3 358 71.5
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 8.5e-148 527.7 439 58.8
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.8e-143 512.7 400 64.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.1e-142 510.8 446 59.2
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.5e-141 505.4 440 58.6
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.0e-140 504.2 371 65.2
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.2e-135 486.5 423 60.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 9.1e-134 481.1 453 57.0
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.2e-129 465.3 416 56.7
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.1e-122 443.4 316 68.4
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 8.3e-119 431.4 435 50.1
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 9.1e-118 427.9 289 71.3
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 3.5e-117 426.0 288 71.5
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 7.7e-117 424.9 288 71.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.7e-116 423.7 441 49.7
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 4.0e-113 412.5 450 51.6
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 9.8e-112 407.9 438 50.9
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.6e-109 400.6 445 46.7
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 2.9e-108 396.4 470 47.9
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.6e-106 390.6 439 47.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 8.0e-98 361.7 442 44.3
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.3e-97 360.1 284 62.0
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.4e-96 356.3 650 37.1
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 5.8e-88 328.9 305 55.4
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 7.1e-86 322.0 192 74.5
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 3.6e-82 309.7 713 32.5
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.7e-79 300.8 280 54.6
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 3.2e-62 243.4 541 33.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 4.6e-61 239.6 325 46.2
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.0e-53 212.6 161 65.2
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 2.3e-52 210.7 160 67.5
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-46 191.4 122 72.1
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 2.1e-42 177.6 116 69.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.9e-37 159.1 147 51.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 7.2e-30 136.0 303 32.3
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 2.1e-29 134.4 303 32.3
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 2.1e-29 134.4 132 57.6
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.7e-26 124.8 79 75.9
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 5.9e-24 116.3 85 62.4
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-23 114.8 80 71.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.8e-18 97.4 58 77.6
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 3.1e-17 94.0 67 73.1
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 1.6e-16 91.7 67 61.2
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 7.2e-14 82.8 461 23.4
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.3e-12 77.8 56 55.4
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 1.8e-09 68.2 43 67.4
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.7e-07 61.6 54 55.6
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 2.9e-07 60.8 44 63.6


User provided reference genes

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