Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.3e-81 305.4 147 100.0
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 6.9e-78 293.9 147 95.9
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.9e-76 288.5 146 95.2
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 9.6e-72 273.5 147 89.1
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 9.6e-72 273.5 147 89.1
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.8e-71 271.2 138 92.8
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.8e-71 271.2 138 92.8
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 4.0e-70 268.1 147 87.1
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.3e-70 267.7 138 92.0
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 5.8e-69 264.2 148 86.5
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 5.5e-67 257.7 148 83.8
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.9e-66 253.8 147 83.7
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-65 252.7 147 81.6
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.8e-65 252.7 142 83.1
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.3e-65 252.3 147 83.0
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.5e-64 248.8 140 84.3
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 3.3e-64 248.4 147 81.0
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 5.7e-64 247.7 142 80.3
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 7.4e-64 247.3 150 81.3
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.3e-63 246.5 146 80.8
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-63 246.5 146 79.5
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.3e-63 246.5 142 80.3
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.6e-63 246.1 150 80.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.6e-63 246.1 147 82.3
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.2e-63 245.7 142 78.9
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.8e-63 245.4 145 82.1
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.8e-63 245.4 145 82.1
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 3.7e-63 245.0 146 80.1
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.8e-63 244.6 142 80.3
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 4.8e-63 244.6 146 80.8
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.8e-63 244.6 142 81.7
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 6.3e-63 244.2 147 81.0
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.3e-63 244.2 145 81.4
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.1e-62 243.4 142 78.2
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.4e-62 243.0 147 78.9
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.4e-62 243.0 147 79.6
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.4e-62 243.0 139 82.7
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.8e-62 242.7 147 78.9
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.8e-62 242.7 147 78.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.8e-62 242.7 143 79.7
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.8e-62 242.7 147 79.6
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.4e-62 242.3 148 79.7
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.4e-62 242.3 143 79.7
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 2.4e-62 242.3 147 78.2
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 2.4e-62 242.3 146 79.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.4e-62 242.3 157 76.4
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.3e-62 241.1 148 79.1
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 6.9e-62 240.7 147 78.2
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.0e-62 240.4 148 77.7
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.2e-61 240.0 133 84.2
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.5e-61 239.6 147 76.9
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.0e-61 239.2 139 82.7
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.0e-61 239.2 152 75.0
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.6e-61 238.8 166 72.3
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.4e-61 238.4 147 78.2
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 3.4e-61 238.4 128 85.9
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.4e-61 238.4 147 78.2
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 4.5e-61 238.0 147 78.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 5.9e-61 237.7 148 77.7
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 5.9e-61 237.7 139 79.1
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.0e-60 236.9 136 80.9
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.7e-60 236.1 140 80.7
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 2.2e-60 235.7 147 76.9
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 2.2e-60 235.7 147 76.9
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 2.2e-60 235.7 142 75.4
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 147 76.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.9e-60 235.3 150 75.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 2.9e-60 235.3 145 77.9
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 6.5e-60 234.2 139 78.4
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 8.5e-60 233.8 137 81.0
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 8.5e-60 233.8 138 79.7
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 8.5e-60 233.8 139 81.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.4e-59 233.0 149 77.2
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 1.4e-59 233.0 128 83.6
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.5e-59 232.3 136 81.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 2.5e-59 232.3 133 81.2
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 4.2e-59 231.5 139 77.0
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 7.2e-59 230.7 137 78.1
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.4e-59 230.3 139 77.7
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.2e-58 229.9 132 83.3
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.1e-58 229.2 141 75.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.7e-58 228.8 147 75.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 4.6e-58 228.0 140 77.1
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 4.6e-58 228.0 140 77.1
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.1e-58 227.6 133 80.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.1e-58 227.6 171 66.1
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.1e-58 227.6 171 66.1
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.0e-57 226.9 136 77.9
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.0e-57 226.9 140 77.1
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.0e-57 226.9 129 79.8
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.3e-57 225.7 126 82.5
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.3e-57 225.7 137 79.6
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 3.9e-57 224.9 132 81.1
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.7e-55 219.5 129 80.6
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 8.2e-55 217.2 147 68.7
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.1e-54 216.9 122 78.7
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.1e-54 216.9 127 78.0
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 3.1e-54 215.3 133 78.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 3.1e-54 215.3 136 73.5
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.1e-54 215.3 118 85.6
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 6.9e-54 214.2 112 83.0
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.6e-53 212.2 141 71.6
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.6e-53 212.2 126 78.6
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 4.5e-53 211.5 156 72.4
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 5.9e-53 211.1 150 69.3
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.0e-52 210.3 135 71.9
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.4e-51 206.5 142 69.7
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.9e-51 206.1 147 71.4
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.5e-51 205.7 125 74.4
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 7.2e-51 204.1 141 66.7
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.4e-49 199.9 152 68.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.9e-49 198.4 104 83.7
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.1e-49 198.0 105 83.8
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 6.7e-49 197.6 138 68.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.1e-48 196.8 104 82.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.1e-48 196.8 135 65.9
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.8e-47 192.2 112 83.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.3e-46 188.0 145 67.6
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 9.1e-46 187.2 128 68.8
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 7.7e-45 184.1 141 66.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-44 183.3 149 65.8
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.4e-43 179.9 112 77.7
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 2.7e-42 175.6 91 81.3
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.4e-41 173.3 109 78.0
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 7.4e-40 167.5 152 61.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 9.1e-38 160.6 78 85.9
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.6e-37 159.8 88 84.1
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-35 152.9 92 79.3
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.6e-34 148.7 101 74.3
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.1e-30 135.2 87 79.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.2e-28 129.4 104 60.6
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.1e-26 122.9 64 82.8
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 3.6e-26 122.1 61 82.0
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 4.2e-19 98.6 49 79.6
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 5.5e-19 98.2 52 84.6
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 7.2e-19 97.8 57 84.2
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.3e-17 92.8 299 27.8
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.7e-15 86.7 74 67.6
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.8e-15 85.9 52 71.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.9e-11 73.2 38 92.1
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-10 70.1 40 72.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-10 69.7 49 67.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.8e-10 69.3 42 71.4
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.3e-07 57.8 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 1.1e-06 57.4 46 65.2


User provided reference genes

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