Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168441 Rosa chinensis HOM05D000113 ORTHO05D014811 6.7e-54 213.8 109 100.0
FAN02G4173 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.0e-34 149.1 108 74.1
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 5.0e-33 144.4 109 68.8
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 1.5e-29 132.9 106 67.0
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 2.2e-28 129.0 106 63.2
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 4.8e-28 127.9 107 62.6
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 4.8e-28 127.9 108 62.0
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 1.8e-27 125.9 103 64.1
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 1.8e-27 125.9 103 65.0
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 2.4e-27 125.6 106 62.3
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 3.1e-27 125.2 103 64.1
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 3.1e-27 125.2 109 59.6
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 4.1e-27 124.8 106 62.3
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 4.1e-27 124.8 109 61.5
Atru.chr9.1268 Acer truncatum HOM05D000113 ORTHO05D006161 5.4e-27 124.4 106 66.0
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 5.4e-27 124.4 106 63.2
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 5.4e-27 124.4 106 62.3
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 9.1e-27 123.6 106 61.3
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 1.2e-26 123.2 105 63.8
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.2e-26 123.2 104 63.5
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 1.2e-26 123.2 104 63.5
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 1.6e-26 122.9 103 63.1
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 1.6e-26 122.9 109 60.6
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.6e-26 122.9 104 63.5
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 2.0e-26 122.5 104 63.5
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 2.0e-26 122.5 104 63.5
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 2.7e-26 122.1 110 60.9
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 2.7e-26 122.1 106 61.3
AT1G33390 Arabidopsis thaliana HOM05D000113 ORTHO05D006161 3.5e-26 121.7 103 62.1
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 3.5e-26 121.7 105 62.9
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 3.5e-26 121.7 105 62.9
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 3.5e-26 121.7 103 63.1
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 5.9e-26 120.9 103 62.1
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 5.9e-26 120.9 103 62.1
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 5.9e-26 120.9 103 63.1
CAN.G986.23 Capsicum annuum HOM05D000113 ORTHO05D006161 7.7e-26 120.6 95 65.3
COL.COLO4_23301 Corchorus olitorius HOM05D000113 ORTHO05D006161 7.7e-26 120.6 106 60.4
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 7.7e-26 120.6 109 60.6
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 7.7e-26 120.6 100 62.0
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 1.0e-25 120.2 116 57.8
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 1.0e-25 120.2 97 63.9
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 1.3e-25 119.8 106 62.3
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 1.3e-25 119.8 109 59.6
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 1.3e-25 119.8 98 63.3
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 1.3e-25 119.8 106 61.3
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 1.3e-25 119.8 109 55.0
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 1.7e-25 119.4 98 60.2
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 2.9e-25 118.6 103 60.2
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 2.9e-25 118.6 105 61.0
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 3.8e-25 118.2 106 59.4
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 5.0e-25 117.9 107 59.8
DCAR_018927 Daucus carota HOM05D000310 ORTHO05D006161 6.5e-25 117.5 106 58.5
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 6.5e-25 117.5 110 58.2
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 8.6e-25 117.1 98 65.3
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 8.6e-25 117.1 106 58.5
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 1.1e-24 116.7 98 63.3
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 1.1e-24 116.7 109 56.9
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 1.5e-24 116.3 103 61.2
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 1.5e-24 116.3 102 59.8
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 1.5e-24 116.3 102 59.8
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 2.5e-24 115.5 102 59.8
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 2.5e-24 115.5 102 59.8
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 2.5e-24 115.5 102 59.8
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 2.5e-24 115.5 106 58.5
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 2.5e-24 115.5 103 60.2
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 2.5e-24 115.5 106 58.5
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 4.2e-24 114.8 107 58.9
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 4.2e-24 114.8 106 57.5
unitig_22.g5234 Utricularia gibba HOM05D000113 ORTHO05D006161 4.2e-24 114.8 106 56.6
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 5.5e-24 114.4 106 57.5
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 7.2e-24 114.0 106 57.5
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 9.5e-24 113.6 106 57.5
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 1.2e-23 113.2 103 56.3
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 1.2e-23 113.2 107 57.9
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 1.2e-23 113.2 106 58.5
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 1.2e-23 113.2 98 62.2
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 1.6e-23 112.8 97 59.8
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 2.8e-23 112.1 103 58.3
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 2.8e-23 112.1 105 59.0
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.8e-23 112.1 105 58.1
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 3.6e-23 111.7 114 55.3
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 4.7e-23 111.3 105 59.0
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 8.0e-23 110.5 105 57.1
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 3.0e-22 108.6 106 53.8
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 4.0e-22 108.2 105 55.2
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 8.9e-22 107.1 98 55.1
Potri.002G201400 Populus trichocarpa HOM05D000113 ORTHO05D006161 8.9e-22 107.1 106 56.6
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 3.4e-21 105.1 97 54.6
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 5.7e-21 104.4 105 53.3
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 1.3e-20 103.2 105 53.3
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 1.7e-20 102.8 105 52.4
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 3.7e-20 101.7 99 53.5
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 4.9e-20 101.3 98 57.1
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 1.1e-19 100.1 110 53.6
Hma1.2p1_0098F.1_g048420 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.8e-19 99.4 106 47.2
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 1.6e-18 96.3 105 53.3
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 3.5e-18 95.1 104 52.9
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 5.9e-18 94.4 98 54.1
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 7.8e-18 94.0 95 55.8
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 7.8e-18 94.0 95 55.8
TPR.G23919 Trifolium pratense HOM05D000113 ORTHO05D006161 3.8e-17 91.7 109 49.5
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 6.6e-17 90.9 104 53.8
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 6.6e-17 90.9 103 51.5
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 6.6e-17 90.9 106 50.0
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 8.6e-17 90.5 98 53.1
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 8.6e-17 90.5 103 51.5
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 1.9e-16 89.4 103 50.5
SEGI_22008 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 1.9e-16 89.4 91 51.6
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 4.3e-16 88.2 103 49.5
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 4.3e-16 88.2 87 52.9
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 7.3e-16 87.4 91 51.6
AagrBONN_evm.TU.Sc2ySwM_344.808 Anthoceros agrestis HOM05D000482 ORTHO05D000349 6.1e-15 84.3 100 50.0
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 1.4e-14 83.2 86 50.0
Pp3c3_18630 Physcomitrium patens HOM05D000113 ORTHO05D006161 1.4e-14 83.2 98 48.0
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 1.8e-14 82.8 86 50.0
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 3.0e-14 82.0 110 45.5
SMO367G1023 Selaginella moellendorffii HOM05D000113 ORTHO05D006161 6.8e-14 80.9 106 47.2
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 1.5e-13 79.7 71 59.2
FAN09G2231 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.6e-13 79.0 103 48.5
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 1.7e-12 76.3 66 57.6
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 2.2e-12 75.9 103 44.7
BcaB07g30168 Brassica carinata HOM05D000113 ORTHO05D006161 3.2e-11 72.0 75 53.3
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 5.4e-11 71.2 102 45.1
CBR_g66799 Chara braunii HOM05D000113 ORTHO05D006161 2.0e-10 69.3 108 40.7
Migut.G00075 Erythranthe guttata HOM05D000113 ORTHO05D006161 2.3e-09 65.9 80 50.0
FAN09G2219 Fragaria x ananassa HOM05D016056 ORTHO05D014811 3.0e-09 65.5 42 73.8
RcHm_v2.0_Chr4g0386401 Rosa chinensis HOM05D000113 ORTHO05D006161 1.9e-08 62.8 58 58.6
FAN14G3315 Fragaria x ananassa HOM05D016056 ORTHO05D014811 3.6e-07 58.5 41 70.7
Cfa023404 Carpinus fangiana HOM05D000113 ORTHO05D006161 3.1e-06 55.5 98 36.7
Cre07.g352251 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D006161 4.0e-06 55.1 127 35.4
FvH4_6g48600 Fragaria vesca HOM05D016056 ORTHO05D014811 5.2e-06 54.7 48 58.3
Zm00001eb375140 Zea mays HOM05D000113 ORTHO05D008562 5.2e-06 54.7 85 30.6
Ciclev10030845m.g Citrus clementina HOM05D000113 ORTHO05D008562 6.8e-06 54.3 77 35.1


User provided reference genes

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