Gene: AT1G33390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G33390
  • Transcript Identifier AT1G33390.1
  • Gene Type Coding gene
  • Location Chr1 : 12099738-12104108 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G33390.1
  • symbol FAS4
  • Alias ATFAS4,FASCIATED STEM 4
  • full_name FASCIATED STEM 4
  • uniprot Q9C813

Descriptions

  • Description RNA helicase family protein
  • Computational description FASCIATED STEM 4 (FAS4); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 16056 Blast hits to 9082 proteins in 1556 species: Archae - 2; Bacteria - 6415; Metazoa - 3625; Fungi - 2171; Plants - 1181; Viruses - 334; Other Eukaryotes - 2328 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000462
IBA
Gene Ontologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g095710.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IEA
Gene OntologyRNA helicase activity
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
GOA DatabaseATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005622
IBA
Gene Ontologyintracellular anatomical structure1
GO:0005730
IBA
Gene Ontologynucleolus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007502 Helicase-associated domain
IPR001650 Helicase, C-terminal
IPR011709 Domain of unknown function DUF1605
Mapman id Description
35.1 not assigned.annotated