Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.6e-68 262.7 137 100.0
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 7.9e-60 233.8 131 94.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.3e-59 232.3 128 96.1
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.9e-59 231.5 128 96.1
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.7e-59 230.7 128 95.3
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.1e-58 229.9 128 95.3
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.1e-58 229.9 128 95.3
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.8e-56 222.6 130 87.7
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 3.1e-56 221.9 130 88.5
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 3.4e-55 218.4 130 86.9
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 4.5e-55 218.0 133 83.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 5.8e-55 217.6 130 88.5
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 1.7e-54 216.1 133 82.7
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 1.7e-54 216.1 133 82.7
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 2.9e-54 215.3 130 84.6
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 3.8e-54 214.9 133 82.0
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 3.8e-54 214.9 130 84.6
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 3.8e-54 214.9 130 84.6
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 4.9e-54 214.5 130 83.8
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 4.9e-54 214.5 128 85.9
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 6.5e-54 214.2 130 83.8
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 6.5e-54 214.2 128 85.2
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 6.5e-54 214.2 130 86.2
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 1.4e-53 213.0 130 83.8
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.4e-53 213.0 130 83.1
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.9e-53 212.6 128 83.6
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.9e-53 212.6 128 83.6
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 1.9e-53 212.6 130 84.6
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 2.5e-53 212.2 130 84.6
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 3.2e-53 211.8 130 82.3
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 4.2e-53 211.5 130 84.6
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 5.5e-53 211.1 130 82.3
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 7.1e-53 210.7 130 82.3
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 7.1e-53 210.7 130 82.3
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.2e-52 209.9 130 83.8
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.2e-52 209.9 128 84.4
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.2e-52 209.9 130 83.8
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.6e-52 209.5 130 83.8
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.6e-52 209.5 130 83.1
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.7e-52 208.8 128 82.8
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 2.7e-52 208.8 128 82.8
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.7e-52 208.8 130 83.1
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.7e-52 208.8 130 83.8
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 2.7e-52 208.8 130 84.6
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 3.5e-52 208.4 130 83.8
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 3.5e-52 208.4 130 83.8
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.6e-52 208.0 130 83.8
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 4.6e-52 208.0 130 80.8
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 4.6e-52 208.0 130 82.3
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 4.6e-52 208.0 130 83.8
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 4.6e-52 208.0 130 83.8
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 6.0e-52 207.6 131 82.4
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 6.0e-52 207.6 130 83.8
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 6.0e-52 207.6 127 84.3
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 7.9e-52 207.2 130 80.0
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 1.0e-51 206.8 133 80.5
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.0e-51 206.8 130 80.8
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.0e-51 206.8 130 81.5
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.8e-51 206.1 131 81.7
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.8e-51 206.1 128 82.0
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 2.3e-51 205.7 128 82.8
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 2.3e-51 205.7 130 81.5
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 2.3e-51 205.7 128 85.2
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 2.3e-51 205.7 130 82.3
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 3.0e-51 205.3 130 80.0
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 3.0e-51 205.3 130 81.5
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 3.0e-51 205.3 131 82.4
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 5.1e-51 204.5 130 80.8
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 6.7e-51 204.1 130 80.0
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 8.7e-51 203.8 128 82.0
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 8.7e-51 203.8 130 79.2
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.1e-50 203.4 130 79.2
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.1e-50 203.4 130 81.5
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.1e-50 203.4 134 81.3
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.5e-50 203.0 130 80.0
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.9e-50 202.6 130 79.2
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 1.9e-50 202.6 130 79.2
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 5.7e-50 201.1 130 80.8
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 7.4e-50 200.7 117 86.3
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 7.4e-50 200.7 130 78.5
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 1.3e-49 199.9 130 78.5
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 2.8e-49 198.7 138 76.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 3.7e-49 198.4 134 79.9
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 3.7e-49 198.4 133 80.5
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 4.8e-49 198.0 147 74.8
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 6.3e-49 197.6 131 80.2
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 8.2e-49 197.2 131 80.2
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 8.2e-49 197.2 128 78.9
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 8.2e-49 197.2 128 78.1
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.8e-48 196.1 134 78.4
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 1.8e-48 196.1 131 78.6
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 3.1e-48 195.3 130 78.5
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 7.7e-47 190.7 134 75.4
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.4e-45 186.4 130 74.6
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.4e-45 186.4 130 74.6
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.9e-45 186.0 130 70.8
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.2e-44 183.3 130 70.8
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.2e-44 183.3 130 69.2
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 2.3e-43 179.1 137 71.5
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 2.0e-42 176.0 126 73.8
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.2e-39 166.8 132 65.9
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 3.4e-39 165.2 104 84.6
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.9e-37 159.5 132 63.6
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 3.2e-37 158.7 130 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 7.9e-36 154.1 126 63.5
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.4e-35 153.3 130 63.1
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.2e-31 140.2 138 63.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.2e-30 136.0 75 94.7
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 4.2e-29 131.7 171 49.7
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 5.5e-29 131.3 129 62.0
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 2.1e-28 129.4 130 56.9
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 2.7e-28 129.0 128 54.7
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 2.7e-28 129.0 128 54.7
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 9.7e-26 120.6 134 50.7
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.3e-25 117.9 75 82.7
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.4e-24 116.7 129 51.2
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.4e-16 90.1 56 76.8
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 6.5e-14 81.3 54 75.9
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.8e-11 73.2 38 94.7
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.3e-11 72.8 56 57.1
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 7.5e-10 67.8 47 70.2
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.1e-08 62.0 105 38.1


User provided reference genes

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