Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0165441 Rosa chinensis HOM05D003455 ORTHO05D004165 4.8e-126 454.5 230 100.0
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 4.1e-85 318.5 213 80.8
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 5.0e-83 311.6 213 79.3
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 5.0e-83 311.6 213 79.3
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 5.5e-82 308.1 213 78.9
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 2.1e-81 306.2 213 78.4
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.2e-79 300.4 239 71.5
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 2.6e-79 299.3 211 74.4
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 3.5e-76 288.9 211 72.0
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 2.2e-75 286.2 211 70.6
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 1.9e-74 283.1 211 70.1
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 4.2e-74 282.0 211 70.6
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 9.4e-74 280.8 211 68.2
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 9.4e-74 280.8 211 68.7
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 1.2e-73 280.4 211 67.8
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 1.6e-73 280.0 211 69.2
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 2.1e-73 279.6 223 67.3
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.7e-73 279.3 211 69.2
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 4.7e-73 278.5 211 67.3
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 6.1e-73 278.1 211 67.3
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.0e-72 277.3 211 67.3
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 2.3e-72 276.2 212 67.5
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 4.0e-72 275.4 211 66.8
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 4.0e-72 275.4 212 68.9
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 5.2e-72 275.0 211 66.8
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 6.8e-72 274.6 213 67.1
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 6.8e-72 274.6 212 67.9
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 4.4e-71 271.9 211 66.4
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 5.7e-71 271.6 211 66.4
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 5.7e-71 271.6 211 66.8
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.3e-70 270.4 212 66.5
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 1.3e-70 270.4 211 66.4
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 1.7e-70 270.0 211 67.3
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 2.2e-70 269.6 212 66.0
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 3.7e-70 268.9 212 66.0
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 3.7e-70 268.9 212 66.0
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 3.7e-70 268.9 211 65.4
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 4.8e-70 268.5 212 65.6
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 8.3e-70 267.7 211 66.4
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 8.3e-70 267.7 210 65.7
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 1.4e-69 266.9 213 65.3
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 5.4e-69 265.0 211 64.5
MELO3C022038.2 Cucumis melo HOM05D003455 ORTHO05D004165 5.4e-69 265.0 207 67.6
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 7.0e-69 264.6 211 66.4
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 7.0e-69 264.6 199 69.8
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 7.0e-69 264.6 237 60.3
Haze_14415 Corylus avellana HOM05D003455 ORTHO05D004165 2.0e-68 263.1 226 64.6
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 2.7e-68 262.7 211 64.0
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 2.7e-68 262.7 211 65.4
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 2.7e-68 262.7 211 65.4
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 5.9e-68 261.5 211 65.9
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 7.7e-68 261.2 212 64.6
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 7.7e-68 261.2 213 62.9
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 1.0e-67 260.8 212 63.7
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 1.3e-67 260.4 211 63.0
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 1.3e-67 260.4 211 64.0
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 1.7e-67 260.0 212 62.3
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.3e-67 259.6 212 63.7
vmacro18140 Vaccinium macrocarpon HOM05D003455 ORTHO05D004165 2.3e-67 259.6 212 63.2
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 2.9e-67 259.2 212 63.7
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 3.8e-67 258.8 211 62.6
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 3.8e-67 258.8 211 64.5
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 5.0e-67 258.5 212 63.7
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 6.6e-67 258.1 212 63.2
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 6.6e-67 258.1 211 64.9
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 8.6e-67 257.7 212 63.2
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 8.6e-67 257.7 211 63.0
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.5e-66 256.9 211 63.5
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 1.9e-66 256.5 212 62.7
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 1.9e-66 256.5 211 63.5
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 2.5e-66 256.1 211 63.0
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 3.3e-66 255.8 211 62.6
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 4.2e-66 255.4 212 61.8
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 4.2e-66 255.4 212 61.8
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 9.5e-66 254.2 251 57.0
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 1.2e-65 253.8 212 62.7
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 1.2e-65 253.8 212 62.3
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 1.6e-65 253.4 212 62.3
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 1.6e-65 253.4 211 62.1
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 2.1e-65 253.1 212 61.8
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 2.8e-65 252.7 210 61.4
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 2.8e-65 252.7 211 60.7
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 4.7e-65 251.9 212 61.8
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 4.7e-65 251.9 212 61.3
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 6.1e-65 251.5 212 61.3
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.0e-64 250.8 211 62.1
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 1.0e-64 250.8 211 60.7
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.4e-64 250.4 211 60.7
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.4e-64 250.4 212 61.3
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.8e-64 250.0 211 60.2
C03p08220 Brassica napus HOM05D003455 ORTHO05D004165 2.3e-64 249.6 211 61.1
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 6.8e-64 248.1 211 60.2
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 6.8e-64 248.1 212 61.8
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 8.9e-64 247.7 212 59.9
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 8.9e-64 247.7 211 60.7
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 8.9e-64 247.7 212 59.4
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 8.9e-64 247.7 211 60.2
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.2e-63 247.3 211 59.7
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.2e-63 247.3 212 61.3
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 2.0e-63 246.5 211 61.6
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 2.0e-63 246.5 212 60.8
Aa31LG5G12730 Aethionema arabicum HOM05D003455 ORTHO05D004165 2.6e-63 246.1 199 62.8
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 2.6e-63 246.1 211 59.7
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.6e-63 246.1 200 63.5
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 3.4e-63 245.7 208 63.0
BolC3t13319H Brassica oleracea HOM05D003455 ORTHO05D004165 4.4e-63 245.4 217 59.4
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 5.7e-63 245.0 211 60.2
MD17G1062900 Malus domestica HOM05D003455 ORTHO05D004165 1.3e-62 243.8 218 63.3
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 1.3e-62 243.8 212 59.9
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 1.3e-62 243.8 212 60.4
AT3G02200 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 1.7e-62 243.4 199 62.8
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 2.2e-62 243.0 212 59.9
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 2.8e-62 242.7 211 60.7
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 2.8e-62 242.7 212 59.9
A03p07220 Brassica napus HOM05D003455 ORTHO05D004165 4.9e-62 241.9 199 62.3
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 4.9e-62 241.9 211 58.3
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 6.3e-62 241.5 211 59.2
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 6.3e-62 241.5 199 62.3
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 8.3e-62 241.1 212 60.8
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 8.3e-62 241.1 212 59.4
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 1.1e-61 240.7 213 61.0
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 1.1e-61 240.7 211 59.2
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 1.1e-61 240.7 207 60.9
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.4e-61 240.4 212 59.0
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 1.4e-61 240.4 211 57.8
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 1.8e-61 240.0 199 61.3
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 1.8e-61 240.0 199 61.3
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.4e-61 239.6 212 59.4
BcaC01g04456 Brassica carinata HOM05D003455 ORTHO05D004165 3.1e-61 239.2 200 61.5
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 3.1e-61 239.2 212 59.0
BraA03t10044Z Brassica rapa HOM05D003455 ORTHO05D004165 4.1e-61 238.8 199 61.8
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 4.1e-61 238.8 211 58.8
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 5.4e-61 238.4 212 59.4
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 7.0e-61 238.0 212 59.9
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 7.0e-61 238.0 212 60.4
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.2e-60 237.3 211 58.3
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 1.2e-60 237.3 211 58.8
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 3.5e-60 235.7 212 57.5
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 1.7e-59 233.4 208 58.2
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 1.7e-59 233.4 253 52.6
SEGI_08931 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 2.3e-59 233.0 211 57.8
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 2.9e-59 232.6 211 58.8
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 5.0e-59 231.9 210 56.7
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 4.3e-58 228.8 199 58.8
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 4.3e-58 228.8 208 55.8
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 7.3e-58 228.0 300 45.7
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 1.2e-57 227.3 212 55.2
SEGI_28709 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 2.1e-57 226.5 211 56.4
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 1.2e-55 220.7 212 56.6
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 2.4e-53 213.0 212 52.4
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 4.1e-53 212.2 232 50.4
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 5.4e-53 211.8 211 53.1
CDE09G1009 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 7.0e-53 211.5 179 58.7
Mapoly0097s0065 Marchantia polymorpha HOM05D003455 ORTHO05D004165 1.6e-52 210.3 211 52.6
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 2.7e-52 209.5 212 51.4
SMO174G0231 Selaginella moellendorffii HOM05D003455 ORTHO05D004165 1.3e-51 207.2 216 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3585 Anthoceros agrestis HOM05D003455 ORTHO05D004165 3.0e-51 206.1 211 51.2
BcaC01g04476 Brassica carinata HOM05D003455 ORTHO05D004165 5.0e-51 205.3 180 59.4
Pp3c14_18640 Physcomitrium patens HOM05D003455 ORTHO05D004165 8.6e-51 204.5 213 51.2
Pp3c14_18645 Physcomitrium patens HOM05D003455 ORTHO05D004165 8.6e-51 204.5 213 51.2
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 8.6e-51 204.5 211 50.2
Pp3c17_21330 Physcomitrium patens HOM05D003455 ORTHO05D004165 9.5e-50 201.1 213 51.2
CBR_g38096 Chara braunii HOM05D003455 ORTHO05D004165 4.6e-44 182.2 215 47.9
MELO3C000027.2 Cucumis melo HOM05D003455 ORTHO05D004165 9.5e-42 174.5 122 73.0
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 5.6e-34 148.7 207 40.6
BcaB01g05043 Brassica carinata HOM05D003455 ORTHO05D004165 1.9e-29 133.7 131 58.8
RcHm_v2.0_Chr2g0157101 Rosa chinensis HOM05D003455 ORTHO05D004165 2.4e-29 133.3 70 95.7
ECA247G2972 Erigeron canadensis HOM05D003455 ORTHO05D004165 2.3e-27 126.7 120 58.3
Lalb_Chr21g0318341 Lupinus albus HOM05D003455 ORTHO05D004165 1.4e-24 117.5 133 51.1
Actinidia04538 Actinidia chinensis HOM05D003455 ORTHO05D004165 2.4e-21 106.7 84 64.3
MELO3C001165.2 Cucumis melo HOM05D003455 ORTHO05D004165 4.2e-21 105.9 75 72.0
Lalb_Chr21g0318331 Lupinus albus HOM05D003455 ORTHO05D004165 5.6e-18 95.5 71 66.2
RcHm_v2.0_Chr2g0165331 Rosa chinensis HOM05D003455 ORTHO05D004165 1.8e-16 90.5 54 85.2
MCO16G226 Micromonas commoda HOM05D003455 ORTHO05D004165 5.3e-16 89.0 225 29.8
MD17G1062000 Malus domestica HOM05D003455 ORTHO05D004165 9.9e-15 84.7 51 80.4
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 2.4e-13 80.1 189 32.8
PRCOL_00006512 Prasinoderma coloniale HOM05D003455 ORTHO05D004165 9.3e-13 78.2 226 32.3
Sopen11g023010 Solanum pennellii HOM05D003455 ORTHO05D004165 1.6e-12 77.4 69 56.5
Cc00_g06870 Coffea canephora HOM05D003455 ORTHO05D004165 2.1e-12 77.0 87 55.2
PGSC0003DMG400037406 Solanum tuberosum HOM05D003455 ORTHO05D004165 6.7e-11 72.0 199 31.2
MELO3C001701.2 Cucumis melo HOM05D003455 ORTHO05D004165 8.7e-11 71.6 44 77.3
EL10As12g24037 Beta vulgaris HOM05D003455 ORTHO05D004165 1.1e-10 71.2 54 64.8
SGA_v2.0_scaffold79G25605 Striga asiatica HOM05D003455 ORTHO05D000752 3.4e-07 59.7 54 51.9


User provided reference genes

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