Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0165331 Rosa chinensis HOM05D003455 ORTHO05D004165 5.8e-101 370.9 191 100.0
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 1.9e-67 259.6 164 84.1
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 4.2e-67 258.5 164 84.1
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 6.0e-66 254.6 161 84.5
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 6.0e-66 254.6 161 84.5
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 7.9e-66 254.2 161 84.5
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.8e-65 253.1 161 83.9
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 5.5e-59 231.5 172 71.5
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 3.9e-57 225.3 164 68.9
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 5.1e-57 224.9 172 68.6
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 1.1e-56 223.8 172 67.4
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 7.4e-56 221.1 164 68.3
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 7.4e-56 221.1 164 68.3
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 9.6e-56 220.7 164 65.2
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 4.8e-55 218.4 165 67.9
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 6.2e-55 218.0 164 67.1
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 6.2e-55 218.0 164 66.5
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.4e-54 216.9 164 65.2
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 2.4e-54 216.1 164 65.9
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 4.0e-54 215.3 164 65.9
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 5.3e-54 214.9 164 65.9
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 6.9e-54 214.5 164 66.5
Haze_14415 Corylus avellana HOM05D003455 ORTHO05D004165 9.0e-54 214.2 175 62.9
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.2e-53 213.8 164 64.6
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.2e-53 213.8 164 64.6
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.0e-53 213.0 164 65.2
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 2.6e-53 212.6 175 61.7
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 2.6e-53 212.6 175 61.7
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 3.4e-53 212.2 165 65.5
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 4.5e-53 211.8 164 64.0
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 5.8e-53 211.5 164 64.0
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 5.8e-53 211.5 164 64.6
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.0e-52 210.7 164 62.8
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 1.3e-52 210.3 164 65.9
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.2e-52 209.5 175 61.1
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 2.2e-52 209.5 164 63.4
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 2.9e-52 209.1 164 64.0
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 6.5e-52 208.0 164 64.6
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 1.4e-51 206.8 164 62.8
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 1.9e-51 206.5 164 64.0
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 2.5e-51 206.1 163 63.2
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 3.2e-51 205.7 164 62.8
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 5.5e-51 204.9 164 62.2
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 7.1e-51 204.5 164 62.8
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 7.1e-51 204.5 164 62.2
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 9.3e-51 204.1 164 62.2
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 9.3e-51 204.1 164 61.0
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.2e-50 203.8 163 62.0
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 1.6e-50 203.4 164 62.2
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.6e-50 203.4 164 62.2
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.6e-50 203.4 164 61.0
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.1e-50 203.0 175 60.6
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 2.7e-50 202.6 164 62.8
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 4.6e-50 201.8 164 62.2
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 4.6e-50 201.8 164 62.8
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 6.0e-50 201.4 164 62.2
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 6.0e-50 201.4 164 61.6
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 6.0e-50 201.4 164 62.8
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.0e-49 200.7 164 61.6
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 1.3e-49 200.3 164 62.2
vmacro18140 Vaccinium macrocarpon HOM05D003455 ORTHO05D004165 1.3e-49 200.3 166 60.8
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 3.0e-49 199.1 164 61.6
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 3.0e-49 199.1 164 59.8
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 3.0e-49 199.1 164 61.6
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 3.9e-49 198.7 164 60.4
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 3.9e-49 198.7 164 61.0
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 6.7e-49 198.0 164 60.4
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 8.7e-49 197.6 164 62.2
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 1.1e-48 197.2 164 61.0
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 1.5e-48 196.8 164 59.1
MELO3C022038.2 Cucumis melo HOM05D003455 ORTHO05D004165 1.9e-48 196.4 164 59.8
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 1.9e-48 196.4 164 59.8
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 1.9e-48 196.4 164 60.4
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 1.9e-48 196.4 164 61.6
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 2.5e-48 196.1 164 61.0
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 3.3e-48 195.7 164 60.4
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 3.3e-48 195.7 164 59.1
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 4.3e-48 195.3 164 58.5
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 4.3e-48 195.3 164 59.1
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 5.7e-48 194.9 164 60.4
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 5.7e-48 194.9 164 59.1
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 5.7e-48 194.9 178 57.3
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 5.7e-48 194.9 164 59.1
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 9.6e-48 194.1 164 61.0
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 9.6e-48 194.1 164 54.9
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 1.3e-47 193.7 164 58.5
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 1.3e-47 193.7 164 56.1
Aa31LG5G12730 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.6e-47 193.4 164 58.5
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 1.6e-47 193.4 164 58.5
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 2.1e-47 193.0 164 56.1
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 2.1e-47 193.0 164 58.5
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 1.1e-46 190.7 164 56.1
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.1e-46 190.7 164 59.1
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 1.1e-46 190.7 164 59.8
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.4e-46 190.3 164 57.3
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 2.4e-46 189.5 166 56.6
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 2.4e-46 189.5 164 57.9
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 3.1e-46 189.1 165 54.5
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 3.1e-46 189.1 164 54.3
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 3.1e-46 189.1 164 57.3
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 4.1e-46 188.7 188 52.7
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 4.1e-46 188.7 188 52.7
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 5.3e-46 188.3 164 56.7
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 6.9e-46 188.0 164 58.5
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 6.9e-46 188.0 164 57.9
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 9.0e-46 187.6 164 57.9
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 1.2e-45 187.2 164 58.5
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.5e-45 186.8 164 56.1
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 1.5e-45 186.8 164 56.1
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 2.0e-45 186.4 164 53.7
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 2.0e-45 186.4 164 56.1
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 4.5e-45 185.3 168 56.0
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 5.9e-45 184.9 164 57.3
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 7.6e-45 184.5 164 56.7
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 7.6e-45 184.5 164 57.3
C03p08220 Brassica napus HOM05D003455 ORTHO05D004165 1.0e-44 184.1 164 55.5
BolC3t13319H Brassica oleracea HOM05D003455 ORTHO05D004165 1.0e-44 184.1 164 55.5
EL10As12g24037 Beta vulgaris HOM05D003455 ORTHO05D004165 1.3e-44 183.7 166 56.6
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.3e-44 183.7 164 55.5
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 1.3e-44 183.7 164 54.9
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 2.2e-44 183.0 164 53.7
A03p07220 Brassica napus HOM05D003455 ORTHO05D004165 2.9e-44 182.6 164 54.3
BraA03t10044Z Brassica rapa HOM05D003455 ORTHO05D004165 2.9e-44 182.6 164 54.3
ECA247G2972 Erigeron canadensis HOM05D003455 ORTHO05D004165 2.9e-44 182.6 172 56.4
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 5.0e-44 181.8 164 54.9
SEGI_08931 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 5.0e-44 181.8 164 56.7
BcaB01g05043 Brassica carinata HOM05D003455 ORTHO05D004165 6.5e-44 181.4 164 54.9
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 6.5e-44 181.4 165 55.2
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 8.5e-44 181.0 165 55.2
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 1.1e-43 180.6 164 54.9
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 1.1e-43 180.6 164 54.9
AT3G02200 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 1.4e-43 180.3 164 54.9
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 1.4e-43 180.3 165 54.5
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.4e-43 180.3 164 54.9
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 1.4e-43 180.3 168 52.4
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 1.9e-43 179.9 164 54.3
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 3.2e-43 179.1 165 54.5
MD17G1062900 Malus domestica HOM05D003455 ORTHO05D004165 1.2e-42 177.2 159 59.1
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.6e-42 176.8 164 53.0
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 2.7e-42 176.0 164 54.3
BcaC01g04456 Brassica carinata HOM05D003455 ORTHO05D004165 4.6e-42 175.3 164 54.9
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 4.6e-42 175.3 164 54.9
BcaC01g04476 Brassica carinata HOM05D003455 ORTHO05D004165 4.6e-42 175.3 164 54.9
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 4.6e-42 175.3 164 54.9
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 4.6e-42 175.3 164 54.9
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 1.0e-41 174.1 164 54.9
SEGI_28709 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 1.3e-41 173.7 164 55.5
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 5.1e-41 171.8 164 52.4
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 6.7e-41 171.4 164 53.7
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 6.7e-41 171.4 164 54.9
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 8.7e-41 171.0 165 55.8
Mapoly0097s0065 Marchantia polymorpha HOM05D003455 ORTHO05D004165 1.9e-40 169.9 176 51.7
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 3.3e-40 169.1 165 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3585 Anthoceros agrestis HOM05D003455 ORTHO05D004165 7.4e-40 167.9 164 51.2
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 9.7e-40 167.5 151 58.3
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 2.2e-39 166.4 165 54.5
SMO174G0231 Selaginella moellendorffii HOM05D003455 ORTHO05D004165 1.4e-38 163.7 164 52.4
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 6.9e-38 161.4 166 49.4
Pp3c14_18640 Physcomitrium patens HOM05D003455 ORTHO05D004165 2.6e-37 159.5 172 47.7
Pp3c14_18645 Physcomitrium patens HOM05D003455 ORTHO05D004165 2.6e-37 159.5 172 47.7
Pp3c17_21330 Physcomitrium patens HOM05D003455 ORTHO05D004165 4.5e-37 158.7 172 47.7
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 5.9e-37 158.3 177 48.0
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.4e-35 153.7 151 51.7
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.0e-33 147.5 99 68.7
RcHm_v2.0_Chr2g0165451 Rosa chinensis HOM05D003455 ORTHO05D004165 1.1e-32 144.1 93 82.8
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.0e-32 143.3 99 66.7
PGSC0003DMG400037406 Solanum tuberosum HOM05D003455 ORTHO05D004165 7.7e-29 131.3 169 45.0
CBR_g38096 Chara braunii HOM05D003455 ORTHO05D004165 2.7e-26 122.9 167 41.9
Actinidia26257 Actinidia chinensis HOM05D003455 ORTHO05D004165 3.0e-25 119.4 107 55.1
Lalb_Chr21g0318341 Lupinus albus HOM05D003455 ORTHO05D004165 2.4e-22 109.8 108 54.6
RcHm_v2.0_Chr2g0165441 Rosa chinensis HOM05D003455 ORTHO05D004165 1.5e-16 90.5 54 85.2
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 3.0e-09 66.2 67 52.2
Pp3c17_21340 Physcomitrium patens HOM05D003455 ORTHO05D004165 5.7e-08 62.0 57 45.6
Cc00_g06870 Coffea canephora HOM05D003455 ORTHO05D004165 2.2e-07 60.1 48 60.4
CDE09G1009 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 6.3e-07 58.5 43 60.5
TAR622G0706 Trochodendron aralioides HOM05D003455 ORTHO05D004165 5.4e-06 55.5 37 67.6


User provided reference genes

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