Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.2e-17 92.0 43 100.0
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 9.8e-17 89.0 41 97.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 9.8e-17 89.0 41 97.6
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-16 88.6 41 95.1
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.4e-15 85.1 41 95.1
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.4e-15 85.1 41 95.1
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.4e-15 85.1 40 95.0
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.4e-15 85.1 40 95.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 3.2e-15 84.0 41 90.2
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 3.2e-15 84.0 40 92.5
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 4.1e-15 83.6 41 87.8
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 4.1e-15 83.6 41 87.8
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 4.1e-15 83.6 41 87.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 9.2e-15 82.4 41 87.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.6e-14 81.6 40 90.0
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.7e-14 80.9 42 81.0
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 3.5e-14 80.5 40 90.0
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 4.6e-14 80.1 40 85.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 4.6e-14 80.1 40 87.5
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 4.6e-14 80.1 42 83.3
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 4.6e-14 80.1 40 85.0
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 6.0e-14 79.7 40 85.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 6.0e-14 79.7 40 87.5
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 6.0e-14 79.7 40 87.5
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 7.8e-14 79.3 41 82.9
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.0e-13 79.0 41 85.4
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.3e-13 78.6 40 85.0
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.3e-13 78.6 40 82.5
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.3e-13 78.6 40 82.5
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.3e-13 78.6 39 89.7
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.3e-13 78.6 40 85.0
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.7e-13 78.2 39 87.2
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 2.3e-13 77.8 41 82.9
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 2.3e-13 77.8 41 82.9
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.3e-13 77.8 41 82.9
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.3e-13 77.8 40 85.0
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 2.3e-13 77.8 40 85.0
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 2.3e-13 77.8 40 85.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.3e-13 77.8 40 85.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 2.3e-13 77.8 39 89.7
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 3.0e-13 77.4 38 89.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.0e-13 77.4 40 82.5
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.0e-13 77.4 40 87.5
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 3.0e-13 77.4 41 85.4
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.9e-13 77.0 41 80.5
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 5.1e-13 76.6 39 82.1
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 6.6e-13 76.3 41 80.5
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 82.5
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 82.5
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 80.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 80.0
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 80.0
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 6.6e-13 76.3 40 82.5
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 8.6e-13 75.9 39 84.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 8.6e-13 75.9 40 82.5
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-12 75.5 41 80.5
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-12 75.5 40 82.5
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.5e-12 75.1 40 80.0
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.5e-12 75.1 38 86.8
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.5e-12 75.1 40 82.5
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.5e-12 75.1 40 82.5
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.5e-12 75.1 39 87.2
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.5e-12 75.1 35 97.1
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.9e-12 74.7 40 80.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 80.0
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 80.0
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 85.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 87.5
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 87.5
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 87.5
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.5e-12 74.3 40 80.0
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.3e-12 73.9 39 82.1
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.3e-12 73.9 40 80.0
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 3.3e-12 73.9 40 80.0
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 4.3e-12 73.6 40 80.0
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 4.3e-12 73.6 40 80.0
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.3e-12 73.6 40 77.5
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 4.3e-12 73.6 35 94.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.6e-12 73.2 39 82.1
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 5.6e-12 73.2 40 80.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 5.6e-12 73.2 39 82.1
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 5.6e-12 73.2 40 80.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 7.3e-12 72.8 40 80.0
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 7.3e-12 72.8 40 80.0
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.3e-12 72.8 39 79.5
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 9.5e-12 72.4 40 80.0
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 9.5e-12 72.4 40 80.0
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 9.5e-12 72.4 40 80.0
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 9.5e-12 72.4 40 77.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 9.5e-12 72.4 40 80.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.2e-11 72.0 40 80.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.6e-11 71.6 39 79.5
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.6e-11 71.6 38 78.9
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.6e-11 71.6 38 78.9
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.6e-11 71.6 40 80.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.1e-11 71.2 40 77.5
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 2.1e-11 71.2 40 77.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 2.1e-11 71.2 40 77.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 2.1e-11 71.2 40 80.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.8e-11 70.9 40 75.0
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 2.8e-11 70.9 39 82.1
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 3.6e-11 70.5 39 76.9
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 4.7e-11 70.1 40 82.5
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 6.2e-11 69.7 40 72.5
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 6.2e-11 69.7 40 72.5
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 6.2e-11 69.7 40 72.5
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 6.2e-11 69.7 40 77.5
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.1e-11 69.3 40 77.5
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.1e-11 69.3 40 77.5
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.1e-11 69.3 40 72.5
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-10 68.9 40 72.5
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.1e-10 68.9 40 72.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.1e-10 68.9 40 77.5
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.1e-10 68.9 40 72.5
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.8e-10 68.2 40 75.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.8e-10 68.2 40 70.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.3e-10 67.8 40 75.0
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 5.2e-10 66.6 40 77.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 5.2e-10 66.6 40 77.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 5.2e-10 66.6 40 77.5
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 5.2e-10 66.6 40 72.5
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.5e-09 65.1 40 70.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.5e-09 65.1 41 65.9
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.0e-09 64.7 39 76.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.6e-09 64.3 39 76.9
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 4.4e-09 63.5 36 80.6
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 5.8e-09 63.2 40 72.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.7e-08 61.6 40 70.0
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 9.2e-07 55.8 25 88.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.1e-06 54.7 38 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 4.6e-06 53.5 38 63.2


User provided reference genes

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