Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 4.1e-292 1007.3 494 100.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.6e-281 970.3 494 96.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-280 969.1 494 96.4
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.3e-279 964.9 494 96.2
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-278 961.4 494 95.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-276 954.1 494 95.1
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 9.8e-262 906.4 495 89.7
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.3e-250 868.6 495 85.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.1e-250 867.5 494 85.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 8.6e-250 866.7 442 95.7
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.1e-249 866.3 495 85.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.5e-249 865.1 495 84.8
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 3.6e-248 861.3 495 84.8
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 5.2e-247 857.4 492 85.6
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 5.2e-247 857.4 496 84.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.5e-246 855.9 494 84.2
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 7.6e-246 853.6 496 83.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 9.9e-246 853.2 496 83.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.7e-245 852.4 496 83.9
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.9e-245 851.7 496 84.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.8e-245 851.3 494 84.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 3.2e-244 848.2 494 84.2
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 3.2e-244 848.2 491 83.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 4.2e-244 847.8 488 85.2
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.2e-243 846.3 491 83.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.6e-243 845.9 496 83.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.1e-243 845.5 494 83.6
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.1e-243 845.5 491 83.1
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 491 83.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.8e-243 843.6 496 83.7
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.3e-242 842.8 489 84.3
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.3e-242 842.0 493 83.8
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.0e-242 841.6 493 84.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.9e-242 841.3 492 83.5
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.1e-242 840.9 496 83.5
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 5.1e-242 840.9 493 83.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.6e-242 840.5 496 83.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 8.7e-242 840.1 492 82.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.5e-241 839.3 496 83.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 4.3e-241 837.8 490 83.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.6e-241 836.6 496 83.3
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.3e-240 836.3 489 83.6
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.3e-240 836.3 496 82.9
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.6e-240 835.9 494 83.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.6e-240 835.9 496 82.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.1e-240 835.5 493 82.6
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.6e-240 834.7 493 81.9
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.2e-240 833.9 493 83.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 8.1e-240 833.6 495 82.4
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 8.1e-240 833.6 492 83.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.4e-239 832.8 492 81.5
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.8e-239 832.4 496 82.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 6.9e-239 830.5 491 82.1
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.9e-239 830.5 493 81.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 6.9e-239 830.5 493 81.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 9.0e-239 830.1 506 80.6
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 5.8e-238 827.4 502 80.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.9e-238 826.6 492 81.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.3e-237 826.2 497 80.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.2e-237 825.5 491 81.9
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.9e-236 822.4 493 81.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.2e-236 821.2 491 81.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 7.1e-236 820.5 491 81.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 9.3e-236 820.1 492 81.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.3e-236 820.1 493 80.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-235 819.7 493 80.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.6e-235 819.3 488 81.6
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.6e-235 819.3 498 80.5
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.1e-235 818.9 492 81.3
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.7e-235 818.5 499 80.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.6e-235 817.8 493 80.5
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 4.6e-235 817.8 493 80.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 7.9e-235 817.0 491 81.1
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 80.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.3e-234 815.5 488 80.9
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-234 815.1 491 80.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 5.1e-234 814.3 526 78.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 6.7e-234 813.9 488 81.4
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.5e-233 812.8 494 81.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.3e-233 811.6 495 79.4
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 81.5
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 7.4e-233 810.4 488 81.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 7.4e-233 810.4 486 80.7
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.4e-233 810.4 493 79.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 7.4e-233 810.4 495 78.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-232 809.7 491 80.2
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-232 808.9 486 81.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.8e-232 808.5 488 80.9
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.7e-232 808.1 496 79.6
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.4e-231 805.4 490 80.6
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 5.3e-231 804.3 488 80.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 2.6e-230 802.0 475 82.1
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.6e-230 802.0 531 75.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 7.6e-230 800.4 492 79.7
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.2e-229 798.9 474 82.3
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 2.2e-229 798.9 493 78.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 3.2e-228 795.0 496 77.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 3.9e-226 788.1 488 79.3
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.3e-225 785.0 497 77.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 4.5e-222 774.6 484 77.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.4e-220 769.6 493 75.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 9.3e-220 766.9 486 75.7
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.7e-219 765.4 486 75.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 8.7e-218 760.4 512 73.8
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 5.7e-217 757.7 436 85.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 1.6e-216 756.1 439 82.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 4.2e-212 741.5 441 81.6
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.5e-212 741.1 442 82.8
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 3.0e-210 735.3 443 81.7
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 9.7e-209 730.3 498 73.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.2e-208 729.2 384 93.8
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 7.2e-204 714.1 488 72.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 4.6e-203 711.4 438 79.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 8.8e-202 707.2 389 88.2
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.7e-200 701.8 484 72.1
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.6e-195 686.4 487 69.0
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.5e-190 668.7 391 87.2
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.6e-182 643.3 381 82.9
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 7.7e-182 641.0 493 66.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.3e-181 640.2 404 77.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.8e-181 638.6 498 67.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.4e-177 625.2 491 66.4
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 4.8e-176 621.7 347 88.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.5e-174 615.1 471 68.2
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.1e-172 610.5 506 61.5
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.4e-162 577.0 462 67.3
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 7.8e-158 561.2 392 73.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.4e-145 518.8 267 96.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 5.6e-140 501.9 528 50.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-120 437.2 228 95.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 7.1e-119 431.8 464 49.1
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.5e-116 423.3 311 71.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 7.4e-116 421.8 238 84.9
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.2e-111 406.4 241 81.3
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.1e-110 403.7 301 68.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.0e-106 389.4 251 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.8e-105 385.6 436 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.9e-104 383.3 238 76.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 8.2e-99 365.2 303 67.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.1e-94 350.5 481 45.1
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.8e-91 340.1 236 70.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 3.1e-90 336.7 235 71.1
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.0e-77 295.0 254 63.4
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.7e-62 243.0 158 74.1
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.8e-56 223.4 259 50.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 9.8e-52 208.8 150 69.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-49 201.8 297 43.8
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 5.2e-45 186.4 99 87.9
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 6.8e-45 186.0 103 83.5
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 8.9e-45 185.7 113 79.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 8.3e-43 179.1 146 61.6
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.4e-42 177.6 151 64.9
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.7e-41 174.1 104 78.8
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.4e-34 151.0 123 65.0
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 5.1e-32 143.3 75 90.7
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.9e-31 141.4 75 88.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 9.9e-28 129.0 160 45.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.4e-26 125.2 79 75.9
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 7.1e-26 122.9 85 71.8
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 4.4e-20 103.6 51 96.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-18 97.4 93 57.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 8.1e-14 82.8 61 72.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.9e-10 71.6 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 9.6e-07 59.3 30 80.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 2.8e-06 57.8 38 73.7


User provided reference genes

Program Settings