Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 0.0e+00 1154.8 672 100.0
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.4e-242 842.4 624 80.3
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-234 817.0 630 78.4
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 5.3e-234 814.7 627 78.6
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.5e-228 796.6 624 77.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.3e-227 793.5 627 77.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 4.2e-154 549.3 670 56.9
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.1e-149 534.6 688 55.8
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 3.4e-148 529.6 655 58.0
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 6.1e-113 412.5 647 51.0
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.3e-111 406.8 667 49.9
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.3e-110 404.8 681 48.0
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 5.3e-109 399.4 687 48.0
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-105 388.3 667 48.4
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 8.0e-105 385.6 649 48.5
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 3.3e-103 380.2 650 49.4
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 6.5e-99 365.9 639 48.2
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.6e-97 360.1 668 46.6
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 8.0e-97 359.0 656 48.2
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-95 354.4 672 46.4
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-95 354.4 672 46.4
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.6e-95 354.0 643 41.8
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.8e-93 347.8 428 52.1
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.6e-92 344.7 686 43.7
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 4.2e-90 336.7 679 42.0
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 5.5e-90 336.3 417 52.5
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.7e-89 334.0 750 41.9
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 8.8e-88 328.9 385 50.9
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 7.5e-87 325.9 679 44.2
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.2e-86 324.3 654 45.6
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.8e-86 323.9 702 42.2
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 2.4e-85 320.9 362 53.9
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 2.4e-85 320.9 377 53.1
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.2e-84 318.5 672 44.9
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.0e-84 317.8 426 50.7
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 5.9e-84 316.2 638 45.6
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.9e-83 313.9 401 50.9
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.8e-83 313.5 429 50.1
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.1e-82 312.0 402 51.2
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.5e-82 311.6 660 44.2
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.2e-82 310.1 382 51.6
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.2e-82 309.3 424 49.3
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 7.2e-82 309.3 425 50.1
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.2e-81 308.5 403 50.6
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.1e-81 307.8 420 47.6
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 6.1e-81 306.2 385 48.8
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.0e-80 303.9 377 51.2
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.2e-79 302.0 559 41.3
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.6e-79 300.8 384 51.6
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 9.8e-79 298.9 460 43.9
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.7e-78 297.0 679 42.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.7e-78 297.0 417 47.5
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.8e-77 294.7 647 44.7
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.4e-77 294.3 380 49.5
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.0e-77 292.7 630 44.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 9.2e-77 292.4 401 46.4
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 9.2e-77 292.4 605 44.6
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 9.2e-77 292.4 424 46.2
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.0e-76 291.2 632 42.2
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.7e-76 290.8 683 40.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.7e-76 290.8 681 40.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.5e-76 290.4 420 46.9
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 4.5e-76 290.0 421 46.3
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.3e-75 287.7 395 50.4
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.5e-74 285.0 666 41.1
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.5e-74 285.0 423 46.3
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.9e-74 284.6 423 45.6
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.9e-74 284.6 453 46.8
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 7.3e-74 282.7 375 48.0
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.0e-72 276.9 376 49.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 6.8e-72 276.2 229 63.3
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.6e-71 274.2 609 40.4
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.6e-71 274.2 451 45.2
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.4e-71 273.9 350 49.4
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 5.8e-71 273.1 363 49.3
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 7.5e-71 272.7 223 64.1
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.2e-70 271.2 422 44.3
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.4e-70 269.6 407 45.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.4e-69 267.7 265 57.7
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 4.1e-69 266.9 396 47.2
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.1e-69 266.9 347 49.3
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.2e-68 265.4 624 43.9
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.2e-68 265.4 424 45.8
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.2e-68 265.4 624 42.3
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.7e-68 264.2 265 57.4
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 6.0e-68 263.1 426 44.1
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.7e-67 261.5 391 46.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.9e-67 260.4 452 43.4
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 8.6e-67 259.2 405 46.2
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 7.3e-66 256.1 421 44.2
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 7.3e-66 256.1 737 34.7
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 9.5e-66 255.8 354 49.2
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 2.1e-65 254.6 345 49.9
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.8e-65 254.2 312 50.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.6e-65 253.8 611 42.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.1e-64 252.3 358 45.3
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.4e-64 251.9 408 42.4
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.8e-64 251.5 297 50.8
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 1.2e-63 248.8 507 44.8
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.5e-63 246.1 373 46.4
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.3e-62 245.4 412 42.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 6.4e-62 243.0 374 46.0
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 6.4e-62 243.0 397 44.6
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 6.4e-62 243.0 374 46.0
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.9e-61 241.5 418 43.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 5.4e-61 240.0 645 41.9
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.7e-60 237.7 355 46.5
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.3e-59 235.3 417 43.9
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 3.0e-59 234.2 420 41.4
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.1e-58 232.3 443 41.1
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.5e-58 231.9 394 42.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 5.6e-58 229.9 388 42.5
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 2.1e-57 228.0 398 41.2
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 3.6e-57 227.3 459 38.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.6e-57 227.3 362 44.8
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.0e-56 223.8 353 43.6
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.7e-54 218.4 407 42.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.7e-54 218.4 392 44.1
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.1e-53 215.7 322 44.4
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.4e-53 215.3 312 45.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 3.2e-53 214.2 389 42.7
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 3.2e-53 214.2 183 62.3
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 9.2e-53 212.6 189 57.1
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 4.6e-52 210.3 228 53.5
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 9.5e-50 202.6 171 63.2
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 8.1e-49 199.5 380 42.1
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.1e-48 199.1 372 40.6
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.2e-46 191.4 383 40.2
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 5.4e-45 186.8 421 37.8
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-44 185.3 423 38.5
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.2e-41 175.6 220 49.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.2e-41 175.6 227 47.6
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 9.0e-40 169.5 204 47.1
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.1e-36 158.3 434 35.0
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.0e-35 156.0 140 55.7
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 1.3e-35 155.6 174 51.1
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.0e-35 154.5 163 50.3
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.4e-32 145.6 208 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 2.2e-30 138.3 372 32.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 5.4e-29 133.7 221 39.4
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 5.1e-27 127.1 97 68.0
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-25 122.1 125 59.2
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 8.1e-25 119.8 125 59.2
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 5.5e-21 107.1 265 39.6
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 8.2e-17 93.2 101 50.5
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.4e-13 82.4 71 56.3
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 2.1e-12 78.6 195 34.4
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.6e-09 68.9 153 28.8
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 6.3e-09 67.0 100 37.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.9e-07 60.5 78 47.4


User provided reference genes

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