Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 1.5e-68 262.7 133 100.0
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.3e-59 233.0 128 91.4
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.6e-57 226.1 137 85.4
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.7e-56 220.7 161 75.2
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 2.8e-54 215.3 132 82.6
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 3.7e-54 214.9 126 87.3
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.3e-54 214.2 126 86.5
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-53 213.0 126 84.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.4e-53 213.0 136 80.9
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.1e-53 211.8 126 85.7
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.9e-53 210.7 133 79.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 9.1e-53 210.3 126 84.1
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 1.5e-52 209.5 128 82.0
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.5e-52 209.5 132 81.1
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.6e-52 208.8 126 84.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.6e-52 208.8 132 81.1
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 3.4e-52 208.4 127 83.5
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 4.5e-52 208.0 128 82.0
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 4.5e-52 208.0 127 83.5
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.5e-52 208.0 125 84.8
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 4.5e-52 208.0 128 82.0
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 5.9e-52 207.6 128 82.8
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 5.9e-52 207.6 128 84.4
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 7.7e-52 207.2 125 84.8
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 7.7e-52 207.2 125 84.8
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 7.7e-52 207.2 125 84.8
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.0e-51 206.8 128 81.2
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.0e-51 206.8 125 82.4
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.3e-51 206.5 129 79.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-51 206.5 126 84.1
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.3e-51 206.5 126 84.1
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.3e-51 206.5 128 82.8
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.7e-51 206.1 141 78.7
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.9e-51 205.3 126 83.3
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.9e-51 205.3 126 83.3
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.9e-51 205.3 126 81.7
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.9e-51 205.3 125 84.0
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.8e-51 204.9 122 83.6
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.0e-51 204.5 126 81.7
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 6.5e-51 204.1 125 80.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 8.5e-51 203.8 128 82.0
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 8.5e-51 203.8 129 82.2
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 8.5e-51 203.8 132 79.5
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.1e-50 203.4 126 84.1
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.4e-50 203.0 132 76.5
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.4e-50 203.0 132 76.5
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.4e-50 203.0 132 76.5
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.5e-50 202.2 128 81.2
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 2.5e-50 202.2 132 78.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 4.2e-50 201.4 128 80.5
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 5.5e-50 201.1 127 81.9
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 7.2e-50 200.7 129 78.3
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 7.2e-50 200.7 125 81.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 9.4e-50 200.3 129 79.1
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 9.4e-50 200.3 125 81.6
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 9.4e-50 200.3 126 80.2
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.2e-49 199.9 128 80.5
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.6e-49 199.5 128 79.7
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 4.7e-49 198.0 115 86.1
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 6.1e-49 197.6 124 79.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 7.9e-49 197.2 132 74.2
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.9e-49 197.2 152 69.7
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 1.0e-48 196.8 115 85.2
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.8e-48 196.1 125 77.6
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.8e-48 196.1 132 74.2
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 5.1e-48 194.5 126 77.0
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 5.1e-48 194.5 120 78.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.7e-48 194.1 129 75.2
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 8.8e-48 193.7 131 77.9
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.5e-47 193.0 126 80.2
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.5e-47 193.0 126 81.0
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.5e-47 193.0 126 77.0
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.5e-47 193.0 126 80.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.5e-47 193.0 124 75.8
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 2.0e-47 192.6 126 79.4
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 2.0e-47 192.6 126 79.4
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 2.0e-47 192.6 126 79.4
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 2.0e-47 192.6 126 79.4
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.3e-47 191.8 114 81.6
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.3e-47 191.8 139 71.2
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 4.4e-47 191.4 126 78.6
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 4.4e-47 191.4 126 78.6
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 4.4e-47 191.4 126 78.6
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 4.4e-47 191.4 133 72.9
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.4e-47 191.4 124 81.5
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 4.4e-47 191.4 124 81.5
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 5.7e-47 191.0 129 74.4
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 7.4e-47 190.7 126 75.4
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.3e-46 189.9 126 77.8
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.7e-46 189.5 126 78.6
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 2.8e-46 188.7 126 78.6
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 6.3e-46 187.6 126 76.2
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 8.2e-46 187.2 126 76.2
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-45 186.4 126 78.6
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 2.4e-45 185.7 122 80.3
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 2.4e-45 185.7 122 80.3
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 4.1e-45 184.9 117 75.2
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.0e-44 182.6 124 73.4
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 7.7e-44 180.6 98 92.9
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 1.0e-43 180.3 128 72.7
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.8e-43 178.3 124 71.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.4e-42 176.4 107 86.9
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.4e-42 176.4 126 75.4
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 1.9e-42 176.0 107 86.9
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 7.2e-42 174.1 107 84.1
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.2e-41 173.3 107 85.0
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 2.1e-41 172.6 121 67.8
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.6e-41 171.8 113 81.4
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 6.1e-41 171.0 113 77.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.8e-40 169.5 110 78.2
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.0e-40 168.7 116 67.2
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.1e-39 166.8 129 70.5
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.7e-38 161.8 124 70.2
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.2e-36 156.8 113 72.6
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 2.6e-36 155.6 122 68.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 3.5e-36 155.2 137 62.0
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 5.9e-36 154.5 100 75.0
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 3.8e-35 151.8 107 77.6
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 1.1e-34 150.2 115 64.3
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.5e-34 149.8 114 69.3
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.1e-33 146.0 76 98.7
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 2.0e-31 139.4 129 59.7
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-29 133.3 112 68.8
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 5.3e-29 131.3 182 46.7
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 3.5e-28 128.6 76 86.8
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.3e-27 126.7 77 83.1
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 3.2e-26 122.1 76 81.6
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 7.2e-26 120.9 79 79.7
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 2.7e-25 119.0 96 59.4
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 3.6e-25 118.6 120 57.5
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 6.1e-25 117.9 71 84.5
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.5e-23 113.2 76 80.3
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 4.4e-23 111.7 77 77.9
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 4.8e-22 108.2 114 50.0
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 6.3e-22 107.8 94 62.8
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 7.0e-21 104.4 125 52.8
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.3e-19 100.1 61 80.3
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.6e-17 93.2 120 41.7
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.1e-17 92.8 61 75.4
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.7e-17 91.7 56 76.8
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 6.1e-17 91.3 57 75.4
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 6.1e-17 91.3 56 83.9
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 8.9e-16 87.4 49 85.7
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.6e-15 85.9 124 40.3
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.7e-14 83.2 50 80.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.7e-14 82.0 54 72.2
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 4.9e-14 81.6 53 75.5
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.2e-12 77.0 76 59.2
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 7.8e-12 74.3 46 76.1
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.3e-10 68.9 84 50.0
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.6e-09 66.6 126 35.7
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 7.5e-07 57.8 42 66.7
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 2.2e-06 56.2 41 68.3


User provided reference genes

Program Settings