Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0159811 Rosa chinensis HOM05D000492 ORTHO05D020760 2.2e-36 155.2 84 100.0
PGR142G0760 Punica granatum HOM05D000492 ORTHO05D000499 2.1e-15 85.5 54 81.5
Prupe.3G219000 Prunus persica HOM05D000492 ORTHO05D020760 2.8e-15 85.1 55 83.6
Sed0007283 Sechium edule HOM05D000492 ORTHO05D000499 2.8e-15 85.1 54 79.6
CsaV3_2G035100 Cucumis sativus L. HOM05D000492 ORTHO05D000499 3.6e-15 84.7 54 75.9
MELO3C019244.2 Cucumis melo HOM05D000492 ORTHO05D000499 4.7e-15 84.3 54 74.1
Eucgr.K00801 Eucalyptus grandis HOM05D000492 ORTHO05D000499 3.1e-14 81.6 54 74.1
Phvul.005G114200 Phaseolus vulgaris HOM05D000492 ORTHO05D000499 4.0e-14 81.3 54 77.8
FAN02G0103 Fragaria x ananassa HOM05D000492 ORTHO05D000499 6.8e-14 80.5 55 81.8
FAN05G0922 Fragaria x ananassa HOM05D000492 ORTHO05D000499 6.8e-14 80.5 55 81.8
MD09G1106600 Malus domestica HOM05D000492 ORTHO05D020760 6.8e-14 80.5 55 80.0
QL08p033540 Quercus lobata HOM05D000492 ORTHO05D020760 8.9e-14 80.1 53 73.6
GSVIVG01030607001 Vitis vinifera HOM05D000492 ORTHO05D000499 1.2e-13 79.7 60 68.3
FvH4_6g43430 Fragaria vesca HOM05D000492 ORTHO05D000499 2.0e-13 79.0 54 81.5
Aqoxy4G01978 Aquilegia oxysepala HOM05D000492 ORTHO05D000499 4.4e-13 77.8 53 73.6
CAN.G921.15 Capsicum annuum HOM05D000492 ORTHO05D000499 9.9e-13 76.6 51 76.5
Migut.H01223 Erythranthe guttata HOM05D000492 ORTHO05D000499 9.9e-13 76.6 54 74.1
FAN09G1967 Fragaria x ananassa HOM05D000492 ORTHO05D000499 9.9e-13 76.6 54 79.6
Psat5g264800 Pisum sativum HOM05D000492 ORTHO05D000499 9.9e-13 76.6 54 66.7
Thecc.02G312500 Theobroma cacao HOM05D000492 ORTHO05D000499 9.9e-13 76.6 54 77.8
CANSAT64G2584 Cannabis sativa HOM05D000492 ORTHO05D000499 1.3e-12 76.3 54 75.9
Zm00001eb323060 Zea mays HOM05D000492 ORTHO05D000499 2.9e-12 75.1 55 72.7
Glyma.12G194900 Glycine max HOM05D000492 ORTHO05D020760 4.9e-12 74.3 54 72.2
ClCG02G008540 Citrullus lanatus HOM05D000492 ORTHO05D000499 6.4e-12 73.9 54 70.4
Duzib268G0711 Durio zibethinus HOM05D000492 ORTHO05D000499 6.4e-12 73.9 54 75.9
Gohir.A03G109700 Gossypium hirsutum HOM05D000492 ORTHO05D000499 6.4e-12 73.9 54 74.1
Gohir.D02G134500 Gossypium hirsutum HOM05D000492 ORTHO05D000499 6.4e-12 73.9 54 74.1
Gorai.005G150400 Gossypium raimondii HOM05D000492 ORTHO05D000499 6.4e-12 73.9 54 74.1
HPP92_001785 Vanilla planifolia HOM05D000492 ORTHO05D000499 6.4e-12 73.9 61 60.7
HPP92_017611 Vanilla planifolia HOM05D000492 ORTHO05D000499 6.4e-12 73.9 51 70.6
Os07g0528900 Oryza sativa ssp. japonica HOM05D000492 ORTHO05D020760 8.4e-12 73.6 54 68.5
TWI75G1345 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 1.1e-11 73.2 54 74.1
TAR624G1324 Trochodendron aralioides HOM05D000492 ORTHO05D000499 2.4e-11 72.0 54 68.5
Manes.12G075900 Manihot esculenta HOM05D000492 ORTHO05D000499 3.2e-11 71.6 54 72.2
Potri.007G123000 Populus trichocarpa HOM05D000492 ORTHO05D000499 3.2e-11 71.6 53 69.8
Haze_12886 Corylus avellana HOM05D000492 ORTHO05D000499 5.4e-11 70.9 54 70.4
MBI02_g10108_MAGBIO Magnolia biondii HOM05D000492 ORTHO05D000499 1.6e-10 69.3 54 70.4
PSO541G2309 Papaver somniferum HOM05D000492 ORTHO05D000499 1.6e-10 69.3 54 66.7
ECA233G5824 Erigeron canadensis HOM05D000492 ORTHO05D000499 2.1e-10 68.9 62 54.8
Glyma.13G307600 Glycine max HOM05D000492 ORTHO05D000499 2.1e-10 68.9 54 68.5
Rhsim06G0159300 Rhododendron simsii HOM05D000492 ORTHO05D020760 3.5e-10 68.2 53 66.0
PSO675G7830 Papaver somniferum HOM05D000492 ORTHO05D000499 4.6e-10 67.8 54 64.8
Actinidia09706 Actinidia chinensis HOM05D000492 ORTHO05D000499 6.0e-10 67.4 52 63.5
DCAR_012949 Daucus carota HOM05D000492 ORTHO05D000499 7.8e-10 67.0 53 67.9
HPP92_015648 Vanilla planifolia HOM05D000492 ORTHO05D000499 1.0e-09 66.6 53 64.2
Lalb_Chr24g0393111 Lupinus albus HOM05D000492 ORTHO05D000499 1.3e-09 66.2 53 62.3
BcaB08g37293 Brassica carinata HOM05D000492 ORTHO05D000499 3.0e-09 65.1 52 65.4
TAR626G1317 Trochodendron aralioides HOM05D000492 ORTHO05D000499 3.0e-09 65.1 52 63.5
BcaB08g37290 Brassica carinata HOM05D000492 ORTHO05D000499 3.9e-09 64.7 52 63.5
DCAR_019284 Daucus carota HOM05D000492 ORTHO05D000499 3.9e-09 64.7 61 57.4
HanXRQChr11g0347901 Helianthus annuus HOM05D000492 ORTHO05D000499 3.9e-09 64.7 52 59.6
Solyc07g052470.3 Solanum lycopersicum HOM05D000492 ORTHO05D000499 3.9e-09 64.7 54 66.7
Sopen07g026100 Solanum pennellii HOM05D000492 ORTHO05D000499 3.9e-09 64.7 54 66.7
VMungo0331G1488 Vigna mungo HOM05D000492 ORTHO05D000499 3.9e-09 64.7 52 65.4
Glyma.12G194800 Glycine max HOM05D000492 ORTHO05D000499 5.1e-09 64.3 52 65.4
MD09G1106700 Malus domestica HOM05D000492 ORTHO05D000499 5.1e-09 64.3 52 67.3
VMungo1080G0466 Vigna mungo HOM05D000492 ORTHO05D000499 5.1e-09 64.3 52 65.4
Ca_01592_v3 Cicer arietinum L. HOM05D000492 ORTHO05D000499 6.6e-09 63.9 52 65.4
THA.LOC104805769 Tarenaya hassleriana HOM05D000492 ORTHO05D000499 6.6e-09 63.9 61 55.7
TPR.G4177 Trifolium pratense HOM05D000492 ORTHO05D000499 8.7e-09 63.5 52 61.5
Aa31LG3G18460 Aethionema arabicum HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
AL6G18460 Arabidopsis lyrata HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
AT5G08080 Arabidopsis thaliana HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
BcaB01g05636 Brassica carinata HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
BcaB01g05679 Brassica carinata HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
A03p03600 Brassica napus HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
C03p04040 Brassica napus HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
Carub.0006s0697 Capsella rubella HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
Prupe.3G218900 Prunus persica HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 65.4
Sp6g34870 Schrenkiella parvula HOM05D000492 ORTHO05D000499 1.1e-08 63.2 52 63.5
Hma1.2p1_0249F.1_g102380 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 1.5e-08 62.8 60 53.3
Lj3g0005459 Lotus japonicus HOM05D000492 ORTHO05D000499 1.5e-08 62.8 52 63.5
CSS0017653 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 1.9e-08 62.4 51 60.8
CSS0019431 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 1.9e-08 62.4 51 60.8
Medtr2g088700 Medicago truncatula HOM05D000492 ORTHO05D000499 1.9e-08 62.4 52 63.5
AUR62036289 Chenopodium quinoa HOM05D000492 ORTHO05D000499 2.5e-08 62.0 52 59.6
AUR62039738 Chenopodium quinoa HOM05D000492 ORTHO05D000499 2.5e-08 62.0 52 59.6
Peaxi162Scf00007g01112 Petunia axillaris HOM05D000492 ORTHO05D000499 2.5e-08 62.0 52 59.6
SGA_v2.0_scaffold392G50666 Striga asiatica HOM05D000492 ORTHO05D000499 2.5e-08 62.0 52 63.5
BcaB05g21581 Brassica carinata HOM05D000492 ORTHO05D000499 3.3e-08 61.6 52 61.5
Thhalv10014211m.g Eutrema salsugineum HOM05D000492 ORTHO05D000499 3.3e-08 61.6 52 61.5
Lalb_Chr14g0375751 Lupinus albus HOM05D000492 ORTHO05D000499 3.3e-08 61.6 52 57.7
Oeu003855.1 Olea europaea HOM05D000492 ORTHO05D000499 3.3e-08 61.6 52 61.5
Rhsim06G0159400 Rhododendron simsii HOM05D000492 ORTHO05D000499 3.3e-08 61.6 80 43.8
SGA_v2.0_scaffold41G15784 Striga asiatica HOM05D000492 ORTHO05D000499 3.3e-08 61.6 52 61.5
MSTRG.10425 Avicennia marina HOM05D000492 ORTHO05D000499 4.3e-08 61.2 52 59.6
CDE04G3452 Ceratophyllum demersum HOM05D000492 ORTHO05D000499 4.3e-08 61.2 80 45.0
Pp3c3_13140 Physcomitrium patens HOM05D000492 ORTHO05D000499 4.3e-08 61.2 52 55.8
vmacro12221 Vaccinium macrocarpon HOM05D000492 ORTHO05D000499 4.3e-08 61.2 80 42.5
Actinidia03953 Actinidia chinensis HOM05D000492 ORTHO05D000499 5.6e-08 60.8 53 58.5
Lsat_1_v5_gn_9_39661 Lactuca sativa HOM05D000492 ORTHO05D000499 5.6e-08 60.8 52 55.8
ATR0697G086 Amborella trichopoda HOM05D000492 ORTHO05D000499 7.3e-08 60.5 51 62.7
BcaC03g13206 Brassica carinata HOM05D000492 ORTHO05D000499 7.3e-08 60.5 52 61.5
C02p03400 Brassica napus HOM05D000492 ORTHO05D000499 7.3e-08 60.5 52 61.5
Cc06_g07150 Coffea canephora HOM05D000492 ORTHO05D000499 7.3e-08 60.5 52 59.6
arahy.Tifrunner.gnm1.ann1.55IZK7 Arachis hypogaea HOM05D000492 ORTHO05D000499 9.6e-08 60.1 51 52.9
arahy.Tifrunner.gnm1.ann1.SNC74A Arachis hypogaea HOM05D000492 ORTHO05D000499 9.6e-08 60.1 51 52.9
Migut.L01861 Erythranthe guttata HOM05D000492 ORTHO05D000499 9.6e-08 60.1 52 59.6
Solyc10g081580.3 Solanum lycopersicum HOM05D000492 ORTHO05D000499 9.6e-08 60.1 52 59.6
Sopen10g032090 Solanum pennellii HOM05D000492 ORTHO05D000499 9.6e-08 60.1 52 59.6
PGSC0003DMG400028128 Solanum tuberosum HOM05D000492 ORTHO05D000499 9.6e-08 60.1 52 59.6
TPR.G9149 Trifolium pratense HOM05D000492 ORTHO05D000499 1.2e-07 59.7 51 60.8
Lj1A757T34 Lonicera japonica HOM05D000492 ORTHO05D000499 1.6e-07 59.3 60 53.3
QL08p033537 Quercus lobata HOM05D000492 ORTHO05D000499 1.6e-07 59.3 52 53.8
EL10Ac5g11775 Beta vulgaris HOM05D000492 ORTHO05D000499 2.1e-07 58.9 61 50.8
Nitab4.5_0010201g0010 Nicotiana tabacum HOM05D000492 ORTHO05D000499 2.1e-07 58.9 56 57.1
Oeu063099.1 Olea europaea HOM05D000495 ORTHO05D000499 2.1e-07 58.9 52 59.6
Haze_20482 Corylus avellana HOM05D000492 ORTHO05D000499 2.8e-07 58.5 52 53.8
Nitab4.5_0004274g0010 Nicotiana tabacum HOM05D000492 ORTHO05D000499 2.8e-07 58.5 51 60.8
Solyc01g056810.4 Solanum lycopersicum HOM05D000492 ORTHO05D000499 2.8e-07 58.5 51 60.8
Sopen01g025910 Solanum pennellii HOM05D000492 ORTHO05D000499 2.8e-07 58.5 51 60.8
PGSC0003DMG400025493 Solanum tuberosum HOM05D000492 ORTHO05D000499 2.8e-07 58.5 55 58.2
Atru.chr6.3162 Acer truncatum HOM05D000492 ORTHO05D000499 3.6e-07 58.2 52 55.8
HanXRQChr01g0026321 Helianthus annuus HOM05D000492 ORTHO05D000499 3.6e-07 58.2 52 57.7
Cpa.g.sc51.144 Carica papaya HOM05D000492 ORTHO05D000499 4.7e-07 57.8 51 60.8
Nitab4.5_0000117g0130 Nicotiana tabacum HOM05D000492 ORTHO05D000499 4.7e-07 57.8 51 60.8
CDE10G0198 Ceratophyllum demersum HOM05D000492 ORTHO05D000499 6.2e-07 57.4 54 57.4
Cc05_g04930 Coffea canephora HOM05D000492 ORTHO05D000499 6.2e-07 57.4 52 57.7
Lsat_1_v5_gn_8_128461 Lactuca sativa HOM05D000492 ORTHO05D000499 6.2e-07 57.4 60 53.3
MD12G1006500 Malus domestica HOM05D000492 ORTHO05D000499 6.2e-07 57.4 51 56.9
Pp3c4_32180 Physcomitrium patens HOM05D000492 ORTHO05D000499 6.2e-07 57.4 52 48.1
arahy.Tifrunner.gnm1.ann1.G2H5J3 Arachis hypogaea HOM05D000492 ORTHO05D000499 8.1e-07 57.0 52 57.7
CiPaw.03G161800 Carya illinoinensis HOM05D000492 ORTHO05D000499 8.1e-07 57.0 52 55.8
Nitab4.5_0001176g0070 Nicotiana tabacum HOM05D000492 ORTHO05D000499 8.1e-07 57.0 56 55.4
PGR142G2589 Punica granatum HOM05D000492 ORTHO05D000499 8.1e-07 57.0 53 52.8
vmacro07537 Vaccinium macrocarpon HOM05D000492 ORTHO05D000499 8.1e-07 57.0 59 50.8
ECA248G3176 Erigeron canadensis HOM05D000492 ORTHO05D000499 1.1e-06 56.6 52 57.7
RcHm_v2.0_Chr2g0159801 Rosa chinensis HOM05D000492 ORTHO05D000499 1.1e-06 56.6 52 53.8
SGA_v2.0_scaffold112G31668 Striga asiatica HOM05D000492 ORTHO05D000499 1.4e-06 56.2 52 51.9
CARHR205100 Cardamine hirsuta HOM05D000492 ORTHO05D000499 1.8e-06 55.8 52 57.7
Cre13.g588550 Chlamydomonas reinhardtii HOM05D000492 ORTHO05D000499 1.8e-06 55.8 52 50.0
FAN14G5812 Fragaria x ananassa HOM05D000492 ORTHO05D000499 1.8e-06 55.8 52 51.9
HanXRQChr11g0347181 Helianthus annuus HOM05D000492 ORTHO05D000499 1.8e-06 55.8 60 51.7
HPP92_000857 Vanilla planifolia HOM05D000492 ORTHO05D000499 2.4e-06 55.5 82 39.0
Rhsim03G0055600 Rhododendron simsii HOM05D000492 ORTHO05D000499 3.1e-06 55.1 60 48.3
Rhsim03G0056600 Rhododendron simsii HOM05D000492 ORTHO05D000499 3.1e-06 55.1 60 48.3
Hund10804 Selenicereus undatus HOM05D000492 ORTHO05D000499 5.2e-06 54.3 61 47.5
DCAR_013472 Daucus carota HOM05D000492 ORTHO05D000499 6.9e-06 53.9 51 54.9
Hma1.2p1_0127F.1_g059510 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 6.9e-06 53.9 51 58.8
Hma1.2p1_2172F.1_g316000 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 6.9e-06 53.9 51 58.8
Lj2C418T16 Lonicera japonica HOM05D000492 ORTHO05D000499 6.9e-06 53.9 52 55.8
THA.LOC104820781 Tarenaya hassleriana HOM05D000492 ORTHO05D000499 6.9e-06 53.9 60 45.0


User provided reference genes

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