Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 0.0e+00 1166.0 584 100.0
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 0.0e+00 1127.9 587 96.4
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 0.0e+00 1106.7 616 91.6
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 0.0e+00 1097.4 611 92.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.0e-286 988.0 587 83.6
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 1.7e-273 945.7 586 80.4
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.5e-272 942.6 538 86.4
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 1.9e-272 942.2 588 79.6
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 4.3e-272 941.0 585 78.6
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 2.3e-270 935.3 588 78.6
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 2.2e-268 928.7 587 79.2
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 2.4e-267 925.2 588 78.2
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.5e-264 915.2 554 81.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 3.3e-264 914.8 587 76.0
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 5.6e-264 914.1 551 80.2
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.6e-263 912.5 591 76.3
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 4.4e-261 904.4 591 77.0
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 3.7e-260 901.4 590 75.1
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 3.7e-260 901.4 587 75.6
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 3.7e-260 901.4 587 75.8
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 8.3e-260 900.2 582 76.6
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.4e-259 899.4 587 75.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 1.9e-259 899.0 591 75.3
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 2.4e-259 898.7 553 78.8
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.6e-258 896.0 667 68.7
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.7e-258 895.2 592 75.2
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 1.3e-257 892.9 576 75.7
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 5.1e-257 891.0 590 74.9
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 6.6e-257 890.6 590 74.7
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 1.1e-256 889.8 590 74.9
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.6e-255 885.9 601 73.9
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.6e-255 885.9 587 75.0
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 2.1e-255 885.6 554 77.8
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 6.2e-255 884.0 586 73.9
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 8.1e-255 883.6 560 76.2
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 5.2e-254 880.9 553 77.0
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 8.9e-254 880.2 587 74.3
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 2.0e-253 879.0 585 74.4
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.3e-252 876.3 589 74.7
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 8.4e-252 873.6 584 73.5
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 9.2e-251 870.2 594 73.4
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 3.5e-250 868.2 583 73.1
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.7e-249 865.9 593 72.2
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 2.3e-249 865.5 586 72.9
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.1e-248 863.2 593 72.0
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.1e-247 859.0 587 71.7
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 4.7e-247 857.8 582 73.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 6.9e-246 854.0 593 72.8
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 6.9e-246 854.0 587 71.2
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 9.0e-246 853.6 551 74.2
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.5e-245 852.8 587 71.2
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.5e-245 852.8 559 72.6
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 2.6e-245 852.0 587 71.2
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 2.6e-245 852.0 560 74.6
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 7.6e-245 850.5 586 71.8
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 1.3e-244 849.7 587 70.9
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.3e-244 849.7 587 71.0
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 3.8e-244 848.2 587 70.9
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 3.8e-244 848.2 653 66.9
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 4.9e-244 847.8 587 70.7
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 2.4e-243 845.5 587 69.8
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 5.4e-243 844.3 587 70.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.7e-242 842.0 549 73.4
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 4.6e-242 841.3 587 71.6
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 2.1e-239 832.4 588 69.7
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 3.4e-237 825.1 557 73.4
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 2.9e-236 822.0 557 73.1
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 5.4e-235 817.8 540 73.0
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.5e-232 809.7 503 77.9
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 2.5e-232 808.9 555 73.3
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 4.0e-230 801.6 552 71.0
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.3e-228 796.6 585 66.8
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 6.4e-228 794.3 511 78.3
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 1.2e-226 790.0 526 75.5
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 4.3e-224 781.6 544 69.7
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 5.3e-222 774.6 593 67.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.0e-221 772.7 586 66.4
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.0e-220 770.4 551 68.4
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.8e-220 768.5 559 67.6
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 1.8e-217 759.6 577 63.1
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 2.3e-217 759.2 494 76.5
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 5.9e-213 744.6 512 73.0
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.1e-210 736.1 486 74.3
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.0e-209 733.8 536 69.8
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.8e-207 725.7 586 66.9
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 8.2e-207 724.2 564 72.0
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.5e-205 719.9 584 64.7
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.2e-199 699.5 472 69.7
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 3.2e-187 659.1 548 57.8
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 6.1e-186 654.8 568 60.4
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.0e-185 654.1 456 73.7
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 5.2e-185 651.7 543 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 3.6e-170 602.4 533 55.7
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 3.2e-158 562.8 383 72.8
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 9.5e-155 551.2 318 83.0
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 5.8e-152 542.0 335 78.5
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.6e-146 523.9 309 79.3
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 3.7e-143 512.7 383 66.3
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.1e-142 511.1 319 74.6
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.4e-142 510.8 548 51.5
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 3.9e-140 502.7 444 58.8
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 4.6e-133 479.2 572 43.4
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 1.5e-128 464.2 337 70.0
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 6.0e-125 452.2 432 58.1
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 4.2e-102 376.3 206 86.9
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 7.9e-101 372.1 365 51.5
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 7.7e-96 355.5 627 34.8
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.5e-91 341.3 241 71.4
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 6.9e-89 332.4 246 66.7
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.9e-56 223.0 140 72.1
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.3e-54 216.9 160 64.4
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.2e-45 188.7 130 70.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.0e-44 183.7 158 57.0
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 2.9e-42 177.6 149 55.0
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.2e-35 155.6 160 51.9
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.6e-35 154.5 99 74.7
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.2e-32 145.6 86 77.9
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 5.2e-28 130.2 100 55.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.7e-23 115.2 85 67.1
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 9.6e-22 109.4 64 73.4
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 3.1e-20 104.4 105 53.3
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 3.1e-20 104.4 75 65.3
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.6e-15 86.7 84 46.4
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.3e-12 77.0 58 67.2
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.6e-11 74.7 64 62.5
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 4.9e-10 70.5 76 53.9
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 4.9e-10 70.5 82 51.2
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 3.0e-07 61.2 42 66.7
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 1.9e-06 58.5 35 71.4


User provided reference genes

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