Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 4.1e-84 314.7 161 100.0
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.1e-65 253.4 147 89.8
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.1e-65 253.4 147 89.8
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.5e-65 252.3 147 88.4
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 4.0e-63 245.0 151 82.1
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 4.4e-62 241.5 151 81.5
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 9.3e-60 233.8 149 79.2
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 8.7e-58 227.3 149 75.8
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.3e-56 223.4 144 77.8
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 5.3e-55 218.0 149 75.2
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.6e-54 215.7 147 74.8
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 4.5e-54 214.9 147 76.2
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.4e-52 209.1 148 73.0
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 3.2e-52 208.8 153 68.0
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 5.4e-52 208.0 144 75.0
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 9.3e-52 207.2 144 74.3
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.7e-51 205.7 147 72.8
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 3.5e-51 205.3 139 74.8
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 7.9e-51 204.1 147 70.1
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.8e-50 203.0 147 70.7
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 3.3e-49 198.7 132 72.0
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.3e-49 198.4 128 78.1
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.6e-49 198.0 128 77.3
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 7.4e-49 197.6 147 67.3
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 2.8e-48 195.7 130 76.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.8e-48 195.7 149 69.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 3.7e-48 195.3 147 67.3
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.8e-48 194.9 133 71.4
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 6.2e-48 194.5 133 71.4
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.1e-47 193.7 147 64.6
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.1e-47 193.7 147 66.7
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.4e-47 193.4 131 73.3
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 3.1e-47 192.2 136 70.6
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 5.3e-47 191.4 132 68.9
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 5.3e-47 191.4 131 72.5
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.3e-47 191.4 147 63.9
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 6.9e-47 191.0 138 68.8
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 9.0e-47 190.7 131 71.8
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 9.0e-47 190.7 134 70.9
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 2.0e-46 189.5 127 72.4
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 4.5e-46 188.3 147 63.9
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 4.5e-46 188.3 135 65.9
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.8e-46 188.0 115 82.6
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 5.8e-46 188.0 115 82.6
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 5.8e-46 188.0 130 72.3
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 9.9e-46 187.2 141 67.4
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 9.9e-46 187.2 147 63.9
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.3e-45 186.8 127 71.7
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.9e-45 185.7 135 68.9
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 3.8e-45 185.3 134 67.9
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 3.8e-45 185.3 124 77.4
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 3.8e-45 185.3 113 80.5
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 4.9e-45 184.9 135 68.9
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 8.4e-45 184.1 135 69.6
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.1e-44 183.7 134 70.1
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.1e-44 183.7 134 70.1
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.1e-44 183.7 134 70.1
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.4e-44 183.3 134 70.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 2.4e-44 182.6 129 70.5
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 3.2e-44 182.2 131 69.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 4.2e-44 181.8 135 69.6
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 9.3e-44 180.6 115 78.3
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.2e-43 180.3 131 69.5
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 2.1e-43 179.5 148 63.5
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 7.9e-43 177.6 129 70.5
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 7.9e-43 177.6 126 69.0
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.3e-42 176.8 125 65.6
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 2.3e-42 176.0 145 61.4
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 5.1e-42 174.9 136 68.4
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 6.7e-42 174.5 131 64.1
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.1e-41 173.7 148 58.1
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.5e-41 173.3 123 69.9
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.5e-41 173.3 123 66.7
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 1.5e-41 173.3 131 65.6
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 2.5e-41 172.6 115 73.0
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 3.3e-41 172.2 118 72.9
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 3.3e-41 172.2 113 75.2
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.3e-40 170.2 151 57.0
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.3e-40 170.2 121 67.8
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.3e-40 170.2 130 69.2
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.6e-40 169.9 128 69.5
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.6e-40 169.9 121 65.3
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.1e-40 169.5 126 63.5
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 4.8e-40 168.3 127 62.2
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 4.8e-40 168.3 130 65.4
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 2.4e-39 166.0 115 68.7
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.0e-39 165.2 124 66.9
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.0e-37 160.6 147 58.5
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 3.9e-34 148.7 109 66.1
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 5.1e-34 148.3 89 85.4
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.3e-33 145.6 127 64.6
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 1.6e-32 143.3 193 45.6
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 6.9e-31 137.9 124 55.6
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 2.6e-30 136.0 94 67.0
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 7.6e-30 134.4 127 54.3
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 6.5e-29 131.3 84 76.2
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 2.5e-28 129.4 133 47.4
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 3.2e-28 129.0 106 60.4
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.7e-22 107.8 118 50.8
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.5e-20 102.8 74 64.9
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.6e-19 99.0 61 75.4
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 3.6e-19 99.0 135 44.4
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.3e-17 92.4 96 56.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.4e-15 87.0 58 72.4
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.9e-10 68.9 45 75.6
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 9.7e-09 64.3 43 69.8


User provided reference genes

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