Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.6e-205 718.0 355 100.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.1e-193 679.9 355 94.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-193 679.9 355 94.4
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.8e-193 679.1 355 94.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 5.9e-184 647.5 353 89.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.9e-183 645.2 353 89.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.9e-182 642.5 353 89.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-170 602.8 347 85.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-170 602.8 351 85.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-169 599.7 353 83.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.9e-169 599.4 350 84.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.9e-169 599.4 347 85.6
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.7e-168 595.5 350 84.0
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.0e-167 593.6 353 83.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 8.6e-167 590.5 347 83.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-166 590.1 347 83.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.5e-166 589.7 353 83.6
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 4.3e-166 588.2 353 83.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.1e-164 582.0 353 81.3
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.5e-163 579.7 347 82.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.0e-163 579.3 348 83.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.8e-163 577.0 355 82.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-162 576.2 352 81.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.2e-162 575.9 344 82.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.2e-162 575.9 346 80.9
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.4e-161 573.2 346 80.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.1e-161 571.6 354 77.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 6.6e-159 564.3 347 81.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.9e-158 562.8 346 80.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.6e-157 559.7 351 79.5
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.1e-156 555.4 351 78.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.8e-156 554.3 351 78.1
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.2e-155 553.5 328 83.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.2e-155 553.5 352 78.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-155 553.5 382 73.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.4e-155 552.0 332 82.2
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.4e-155 551.6 332 81.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 4.4e-155 551.6 367 76.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 9.9e-155 550.4 351 76.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-154 549.7 364 75.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.7e-154 548.5 359 75.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.9e-154 548.1 351 75.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.9e-153 546.2 361 75.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.2e-153 545.4 355 77.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.1e-153 545.0 349 77.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.1e-153 545.0 349 76.5
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.4e-153 544.7 352 76.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 7.1e-153 544.3 351 77.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-152 543.5 355 75.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-152 543.1 358 76.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.1e-152 542.7 349 77.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.1e-152 542.7 355 75.5
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.7e-152 542.3 349 76.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.7e-152 542.3 347 76.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.3e-151 539.3 354 76.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.3e-151 539.3 351 74.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.5e-150 533.9 354 76.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 9.5e-150 533.9 327 79.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-149 533.5 354 74.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.1e-149 532.7 350 76.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.4e-148 530.0 351 75.5
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.0e-148 528.5 351 76.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 8.9e-148 527.3 380 71.3
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-147 526.6 352 76.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.6e-147 524.2 351 73.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-146 523.5 348 76.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.7e-146 523.1 357 75.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.9e-146 522.3 354 75.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.9e-146 522.3 330 78.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.9e-146 522.3 353 72.5
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 8.4e-146 520.8 352 74.1
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-145 520.4 347 74.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.1e-145 520.4 313 82.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.4e-145 518.1 347 73.8
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-144 516.5 347 74.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-144 516.5 333 76.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.6e-144 515.0 354 72.9
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-142 510.4 329 76.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.9e-142 509.6 374 68.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.3e-142 508.4 409 66.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.8e-141 505.8 327 75.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.6e-141 505.4 329 75.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.2e-141 504.6 329 73.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 8.1e-141 504.2 323 74.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.9e-140 501.1 326 77.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.2e-139 500.4 353 71.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.6e-139 497.7 349 73.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.7e-138 496.5 327 74.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.9e-138 495.0 347 72.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.4e-137 493.4 332 74.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.4e-137 492.7 324 75.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.2e-137 491.9 326 72.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 326 74.8
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.3e-135 486.9 347 72.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-135 486.5 329 73.9
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-135 486.5 320 73.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 3.0e-135 485.7 362 68.8
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.1e-135 485.0 319 74.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.1e-135 485.0 341 73.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.6e-135 484.6 341 69.2
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.6e-135 484.6 326 73.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 8.7e-135 484.2 346 68.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.1e-134 483.8 341 69.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-134 483.8 326 73.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.9e-134 483.0 319 73.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.5e-134 482.6 319 73.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.3e-134 482.3 333 71.8
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.3e-134 482.3 340 72.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.3e-133 480.3 319 73.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.6e-133 479.9 347 68.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.6e-133 479.9 331 70.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.6e-133 479.9 359 67.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.1e-133 479.6 347 68.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.1e-133 479.6 319 73.0
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-133 479.2 329 73.3
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.0e-132 475.3 351 68.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.8e-131 471.5 324 70.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.8e-130 468.8 307 75.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 6.4e-130 468.0 271 84.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 8.4e-130 467.6 336 69.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.3e-129 464.2 305 75.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.9e-128 461.1 326 70.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.0e-127 460.7 274 83.9
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.8e-127 459.9 320 69.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.5e-126 456.1 307 73.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.8e-125 452.6 324 70.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.1e-124 449.1 525 49.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.3e-121 437.6 354 65.3
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 8.7e-119 431.0 284 78.5
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 6.9e-116 421.4 268 78.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-107 394.0 322 64.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.5e-102 377.1 351 55.6
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.0e-98 364.4 227 78.9
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 9.4e-97 357.8 332 54.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.0e-95 352.8 280 66.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 5.3e-92 342.0 242 68.2
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.7e-90 337.0 206 82.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.2e-89 331.6 229 72.5
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.3e-87 326.6 267 64.4
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.1e-86 324.3 288 56.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.7e-85 320.5 204 77.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 7.0e-84 315.1 230 70.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.8e-79 298.1 188 78.7
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 5.3e-76 288.9 162 88.9
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.1e-68 261.5 372 41.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-66 255.0 212 62.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.2e-64 251.1 186 67.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-63 247.7 166 72.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 9.8e-62 241.5 186 69.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.8e-61 240.0 164 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.5e-54 217.6 269 46.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 7.5e-54 215.3 143 73.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.3e-50 204.5 197 56.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.5e-49 198.4 329 40.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-42 176.0 116 78.4
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-31 140.6 126 56.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.1e-28 129.0 259 37.8
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.0e-26 123.6 377 31.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-25 121.3 71 87.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 4.3e-25 119.8 68 82.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 7.3e-25 119.0 252 33.3
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.4e-21 105.9 65 75.4
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-19 101.7 214 35.0
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.7e-18 97.8 60 81.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.9e-17 94.4 86 58.1
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.3e-17 93.6 57 78.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.0e-15 86.7 77 50.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.7e-10 69.3 49 65.3
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 4.8e-08 63.2 51 56.9
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.8e-07 61.2 81 44.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 1.2e-06 58.5 35 74.3


User provided reference genes

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