Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152681 Rosa chinensis HOM05D001068 ORTHO05D348853 5.0e-120 434.5 224 100.0
RcHm_v2.0_Chr1g0336421 Rosa chinensis HOM05D001068 ORTHO05D342963 1.2e-36 157.5 95 88.4
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 2.7e-09 66.6 49 71.4
RcHm_v2.0_Chr7g0206361 Rosa chinensis HOM05D001068 ORTHO05D020111 1.0e-08 64.7 46 73.9
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 3.0e-08 63.2 47 70.2
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 3.9e-08 62.8 44 70.5
COL.COLO4_04705 Corchorus olitorius HOM05D001068 ORTHO05D002190 3.9e-08 62.8 44 70.5
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 6.7e-08 62.0 47 68.1
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 2.0e-07 60.5 44 70.5
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 2.0e-07 60.5 44 68.2
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 3.3e-07 59.7 49 63.3
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 3.3e-07 59.7 49 63.3
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 4.4e-07 59.3 44 68.2
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 7.4e-07 58.5 40 70.0
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.4e-07 58.5 47 66.0
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.4e-07 58.5 44 65.9
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.4e-07 58.5 47 66.0
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.4e-07 58.5 44 65.9
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.4e-07 58.5 47 66.0
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.4e-07 58.5 44 65.9
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 7.4e-07 58.5 57 59.6
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 7.4e-07 58.5 73 45.2
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 7.4e-07 58.5 44 65.9
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 9.7e-07 58.2 44 63.6
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 9.7e-07 58.2 44 63.6
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 9.7e-07 58.2 47 66.0
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 9.7e-07 58.2 44 68.2
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 9.7e-07 58.2 44 68.2
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 1.3e-06 57.8 44 63.6
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 1.3e-06 57.8 44 63.6
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.7e-06 57.4 44 65.9
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 1.7e-06 57.4 44 61.4
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 2.2e-06 57.0 44 61.4
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 2.2e-06 57.0 49 61.2
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.2e-06 57.0 44 65.9
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 2.2e-06 57.0 44 65.9
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 2.2e-06 57.0 40 67.5
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.8e-06 56.6 44 65.9
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 2.8e-06 56.6 87 42.5
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 2.8e-06 56.6 39 66.7
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 2.8e-06 56.6 112 34.8
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 3.7e-06 56.2 69 44.9
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 3.7e-06 56.2 50 62.0
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 3.7e-06 56.2 40 67.5
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 3.7e-06 56.2 43 65.1
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 3.7e-06 56.2 44 61.4
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 4.8e-06 55.8 62 50.0
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 4.8e-06 55.8 44 56.8
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 4.8e-06 55.8 50 58.0
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 4.8e-06 55.8 44 56.8
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 6.3e-06 55.5 44 56.8
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 6.3e-06 55.5 43 65.1
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 6.3e-06 55.5 44 59.1
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 6.3e-06 55.5 43 65.1
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 6.3e-06 55.5 43 65.1
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 6.3e-06 55.5 44 59.1
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 8.2e-06 55.1 39 64.1
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 8.2e-06 55.1 44 59.1
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 8.2e-06 55.1 40 67.5


User provided reference genes

Program Settings