Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2516.1 1280 100.0
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2463.7 1370 93.3
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1255.4 972 70.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1130.9 1637 45.1
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1127.9 1643 45.2
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1127.5 1644 45.2
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1125.9 1638 45.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1125.2 1636 45.0
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1122.1 1638 44.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1099.3 1622 44.8
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.8e-311 1072.8 1640 43.6
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 4.4e-306 1055.0 1648 42.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 3.8e-305 1052.0 1644 42.3
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 7.8e-303 1044.3 1645 41.9
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 3.0e-302 1042.3 1636 42.1
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 1.6e-300 1036.6 1646 41.6
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 6.2e-300 1034.6 1640 41.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 3.4e-298 1028.9 1665 41.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 1.7e-297 1026.5 1648 41.9
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 1.9e-296 1023.1 1647 41.3
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 4.2e-296 1021.9 1638 41.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.3e-294 1016.9 1646 41.1
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 5.1e-294 1015.0 1639 41.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 8.7e-294 1014.2 1640 41.0
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.9e-293 1013.1 1642 41.1
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 2.5e-293 1012.7 1651 41.6
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 9.6e-293 1010.7 1650 41.3
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.8e-292 1008.4 1624 41.4
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 1.5e-290 1003.4 1644 40.5
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 7.6e-290 1001.1 1561 42.0
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 7.6e-290 1001.1 1630 41.3
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 7.6e-290 1001.1 1648 41.1
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 3.8e-289 998.8 1630 40.2
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 4.2e-288 995.3 1634 41.1
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 4.6e-287 991.9 1630 40.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.3e-286 990.3 1624 40.8
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 1.3e-286 990.3 1616 41.1
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 7.4e-285 984.6 1724 39.7
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 9.6e-285 984.2 1632 40.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 1.3e-284 983.8 1637 40.6
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 1.6e-284 983.4 1660 40.6
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 8.2e-284 981.1 1642 39.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 8.2e-284 981.1 1650 39.8
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 5.3e-283 978.4 1643 39.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 5.3e-283 978.4 1648 39.8
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 1.0e-281 974.2 1687 40.0
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 3.8e-281 972.2 1645 39.6
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 6.5e-281 971.5 1465 43.5
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 7.1e-280 968.0 1697 39.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 6.0e-279 964.9 1619 39.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 1.8e-278 963.4 1733 39.4
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 3.0e-278 962.6 1615 39.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 8.2e-276 954.5 1637 39.9
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 8.2e-276 954.5 1637 40.1
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 9.0e-275 951.0 1634 39.8
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 7.6e-274 948.0 1639 39.6
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 6.5e-273 944.9 1632 39.6
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 2.5e-272 943.0 1638 39.7
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 1.8e-270 936.8 1637 39.2
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 8.8e-270 934.5 1486 41.8
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 8.8e-270 934.5 1626 39.5
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 2.5e-269 932.9 1658 38.9
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 5.7e-269 931.8 1798 37.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 1.3e-268 930.6 1640 39.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 1.3e-268 930.6 1674 38.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.8e-268 929.5 1357 43.7
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 2.4e-267 926.4 1582 39.8
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 1.5e-266 923.7 1643 38.9
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 2.9e-265 919.5 1640 39.1
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 6.5e-265 918.3 1644 39.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 8.5e-265 917.9 1640 39.0
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 2.7e-263 912.9 1625 39.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 1.4e-259 900.6 1575 38.7
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 2.4e-259 899.8 1634 38.4
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 2.0e-258 896.7 1645 37.8
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 6.5e-257 891.7 1343 43.5
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 1.5e-253 880.6 1705 36.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.7e-242 843.2 1639 36.6
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 5.9e-242 842.0 1158 45.9
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 4.4e-237 825.9 1235 44.1
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.2e-234 817.8 1589 35.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 2.2e-228 797.0 2062 32.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.8e-228 796.6 1207 43.7
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 1.0e-222 778.1 1134 43.8
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 2.1e-215 753.8 1445 37.7
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 1.8e-206 724.2 1326 36.7
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.9e-204 716.8 1203 39.8
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.4e-198 698.0 1637 31.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 1.3e-196 691.4 1638 31.4
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 5.1e-193 679.5 1065 42.9
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 6.2e-183 646.0 1632 30.6
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 2.3e-169 600.9 1658 28.5
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 1.6e-162 578.2 855 42.5
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 7.4e-144 516.2 983 36.2
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 7.4e-136 489.6 1613 27.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.5e-128 463.0 775 39.0
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 8.8e-121 439.5 1416 30.8
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.6e-114 418.7 858 37.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 3.0e-113 414.5 786 35.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.2e-113 413.7 731 37.8
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.7e-111 407.5 1041 30.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.6e-107 393.7 1006 30.6
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.2e-98 363.6 868 33.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 8.9e-97 359.8 694 37.8
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 3.5e-77 294.7 372 50.0
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 3.8e-71 274.6 685 33.3
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 8.1e-66 256.9 299 50.2
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.4e-64 251.5 695 28.3
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.2e-61 243.0 209 62.2
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.8e-60 239.2 309 46.3
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.9e-51 209.1 300 46.3
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 6.9e-49 200.7 285 41.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.7e-47 196.1 397 32.2
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 4.5e-40 171.4 299 35.8
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 7.7e-40 170.6 304 37.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 1.7e-39 169.5 297 37.7
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-34 152.1 222 44.6
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 6.9e-33 147.5 231 40.7
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 5.9e-32 144.4 258 40.7
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.9e-30 139.4 230 38.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 5.0e-23 114.8 119 52.9
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-21 109.8 160 43.8
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-21 109.8 155 44.5
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 3.6e-21 108.6 308 31.8
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.0e-20 105.1 149 40.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.2e-20 104.8 186 34.9
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.7e-19 101.3 97 53.6
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 7.4e-19 100.9 187 36.9
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 8.2e-18 97.4 753 22.3
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.1e-17 95.5 91 52.7
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.1e-17 95.5 120 41.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 9.1e-17 94.0 288 30.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 4.5e-16 91.7 169 39.1
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 4.5e-16 91.7 169 39.1
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.3e-15 90.1 108 50.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.5e-14 85.9 115 44.3
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.7e-13 82.4 90 44.4
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.8e-12 79.7 422 23.5
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.2e-12 78.2 144 34.7
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.5e-11 76.6 134 38.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 2.8e-10 72.4 204 29.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.3e-10 70.9 109 35.8
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 4.1e-09 68.6 387 25.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 5.4e-09 68.2 73 53.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 5.4e-09 68.2 55 65.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.2e-08 67.0 51 62.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-08 66.6 62 59.7
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 5.9e-08 64.7 419 26.0
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.9e-07 62.4 51 54.9
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.5e-06 58.2 76 46.1
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 7.2e-06 57.8 53 54.7


User provided reference genes

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