Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2690.2 1370 100.0
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2463.7 1370 93.3
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1300.8 975 72.5
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1238.0 1644 48.1
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1237.6 1637 48.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1235.7 1643 48.1
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1233.4 1638 48.0
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1231.5 1636 47.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1231.5 1638 47.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1191.0 1622 46.9
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1177.9 1640 46.4
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1159.8 1644 45.4
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1159.8 1648 45.3
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1141.3 1636 44.9
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1139.8 1645 44.6
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1137.9 1640 44.4
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1131.3 1647 43.9
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1129.4 1665 44.3
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1124.0 1647 44.0
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 1122.5 1648 44.5
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1120.9 1646 43.8
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1120.1 1639 44.5
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 1118.2 1650 44.0
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1114.4 1642 43.8
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1113.2 1639 43.7
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1112.4 1651 44.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1106.3 1640 43.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1104.7 1630 44.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1102.4 1626 44.0
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1101.3 1644 42.9
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 1100.5 1648 43.6
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1095.5 1630 42.9
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1090.1 1660 43.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1088.6 1634 43.6
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1087.8 1465 47.0
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1084.3 1632 42.9
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1083.9 1650 42.7
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1083.9 1630 43.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1083.6 1637 43.1
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1081.6 1642 41.6
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1080.5 1724 42.0
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1079.7 1569 43.9
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1079.7 1624 43.0
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-310 1070.5 1616 43.1
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 2.4e-310 1069.3 1645 41.9
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 2.4e-310 1069.3 1643 42.2
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 2.4e-310 1069.3 1648 42.1
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 9.3e-310 1067.4 1687 42.2
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 3.9e-308 1062.0 1619 42.4
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 8.7e-308 1060.8 1697 42.4
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 8.7e-308 1060.8 1733 42.0
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 5.6e-307 1058.1 1615 42.1
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 1.8e-305 1053.1 1637 42.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 1.8e-305 1053.1 1637 42.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 1.2e-304 1050.4 1634 42.4
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 5.8e-304 1048.1 1639 42.2
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 1.4e-302 1043.5 1638 42.4
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 7.9e-301 1037.7 1632 42.1
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 1.3e-300 1036.9 1637 41.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 1.8e-297 1026.5 1486 44.3
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 1.8e-297 1026.5 1658 41.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 3.1e-297 1025.8 1798 39.5
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 1.2e-296 1023.8 1643 41.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 1.5e-296 1023.5 1627 41.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 4.9e-295 1018.5 1380 45.9
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 6.4e-295 1018.1 1640 41.6
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 6.4e-295 1018.1 1674 41.2
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 6.4e-295 1018.1 1582 42.2
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 1.5e-291 1006.9 1644 41.2
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 2.5e-291 1006.1 1640 41.4
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 7.4e-291 1004.6 1640 41.3
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 2.1e-290 1003.0 1626 41.4
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.5e-288 996.9 1645 40.5
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 4.5e-288 995.3 1634 41.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 7.4e-283 978.0 1581 40.7
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 2.1e-282 976.5 1705 38.8
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.9e-278 963.4 1343 45.9
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 6.5e-271 938.3 1639 39.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.7e-263 913.7 1589 38.5
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 5.7e-259 898.7 1235 46.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 2.0e-256 890.2 2062 34.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 2.2e-250 870.2 1158 47.1
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.1e-249 867.8 1207 46.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 7.0e-249 865.1 1419 41.0
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 6.8e-244 848.6 1447 40.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 3.4e-227 793.1 1326 38.8
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.4e-220 771.2 1637 33.3
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 1.6e-216 757.7 1638 33.3
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 6.8e-212 742.3 1203 40.7
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 2.3e-204 717.2 1632 32.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 2.0e-203 714.1 1073 44.6
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 8.1e-189 665.6 1658 29.9
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 2.6e-171 607.4 855 43.9
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.8e-165 587.4 983 39.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 1.0e-151 542.3 1627 28.1
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.5e-142 511.9 1493 31.4
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 9.7e-134 482.6 775 40.0
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 4.1e-132 477.2 858 40.0
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 2.8e-120 438.0 786 36.4
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 6.1e-120 436.8 694 42.2
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-119 435.6 731 39.0
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.8e-115 419.9 1041 31.0
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.1e-113 416.0 1006 31.4
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 3.4e-110 404.4 373 61.7
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.7e-107 394.8 882 35.5
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 7.8e-91 340.1 686 37.3
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.1e-80 305.4 696 31.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 9.0e-79 300.1 467 42.8
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.8e-71 275.8 400 45.5
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.3e-61 243.0 209 62.2
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.9e-60 239.2 309 46.3
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 5.6e-57 227.6 351 40.5
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 5.8e-54 217.6 397 34.3
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.7e-53 216.1 343 43.1
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.5e-49 202.2 368 38.3
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 7.4e-49 200.7 299 40.5
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 5.9e-46 191.0 304 39.5
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.1e-43 182.6 297 40.1
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.3e-32 144.4 258 40.7
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 4.5e-30 138.3 227 38.8
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.1e-27 129.4 227 36.6
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 8.8e-26 124.0 210 38.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 5.3e-23 114.8 119 52.9
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-21 110.2 156 44.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-21 109.4 223 37.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-21 109.4 223 37.7
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.9e-21 109.0 157 44.6
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 3.8e-21 108.6 308 31.8
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 3.2e-20 105.5 232 35.8
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.2e-20 105.1 149 40.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.2e-20 105.1 186 34.9
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 9.4e-20 104.0 325 31.4
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 6.1e-19 101.3 97 53.6
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 8.8e-18 97.4 753 22.3
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.4e-17 95.5 91 52.7
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.2e-16 92.8 119 41.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.9e-14 84.7 112 44.6
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 8.5e-13 80.9 197 31.5
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.9e-12 79.7 422 23.5
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-11 76.6 134 38.8
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-11 76.3 437 28.6
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.0e-10 72.4 204 29.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.8e-10 70.9 109 35.8
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.2e-09 70.5 171 30.4
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-09 68.9 126 38.1
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 4.4e-09 68.6 387 25.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 5.7e-09 68.2 73 53.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 5.7e-09 68.2 55 65.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.3e-08 67.0 51 62.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-08 66.6 62 59.7
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.1e-07 62.4 51 54.9
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.9e-06 58.2 76 46.1
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 7.7e-06 57.8 53 54.7


User provided reference genes

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