Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.9e-242 842.0 414 100.0
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.2e-196 689.9 372 89.2
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.2e-193 677.6 376 87.0
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.0e-192 673.7 376 86.2
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.3e-190 669.8 376 86.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-189 666.8 376 86.4
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.4e-189 666.4 376 86.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 4.6e-180 634.8 379 81.0
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 8.7e-179 630.6 379 80.5
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.0e-171 607.1 376 78.5
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 3.3e-170 602.1 391 75.7
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 4.3e-170 601.7 373 77.7
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 7.4e-170 600.9 376 77.1
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 3.1e-168 595.5 376 76.6
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.0e-167 592.8 380 75.5
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 2.6e-167 592.4 376 75.8
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 5.9e-167 591.3 372 76.6
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 2.9e-166 589.0 380 75.0
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 6.5e-166 587.8 379 76.0
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.5e-166 587.8 372 76.6
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 6.5e-166 587.8 370 76.8
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 8.5e-166 587.4 375 75.7
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 8.5e-166 587.4 375 75.7
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.4e-165 586.6 374 75.1
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 1.9e-165 586.3 374 75.4
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.6e-164 583.2 373 75.9
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 7.9e-164 580.9 378 74.6
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.4e-163 580.1 373 74.3
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.0e-162 576.2 397 71.5
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 2.0e-162 576.2 378 74.1
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 7.4e-162 574.3 377 72.7
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 3.7e-161 572.0 377 76.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 4.8e-161 571.6 369 75.1
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 8.2e-161 570.9 379 73.1
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 2.4e-160 569.3 370 75.4
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 7.0e-160 567.8 383 72.8
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 9.1e-160 567.4 372 75.0
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.2e-159 567.0 375 74.9
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.6e-159 565.8 371 74.4
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.5e-159 565.5 373 75.1
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 7.7e-159 564.3 373 75.1
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.7e-158 563.1 372 72.8
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 2.2e-158 562.8 373 74.3
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 2.9e-158 562.4 371 75.2
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.0e-158 561.6 373 74.8
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.1e-157 560.5 370 74.9
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.2e-157 558.9 370 74.6
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.6e-156 556.6 369 73.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.1e-156 556.2 370 74.3
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 8.0e-156 554.3 370 73.8
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 2.3e-155 552.7 370 74.9
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.0e-155 552.4 370 73.8
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 4.0e-155 552.0 372 73.7
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 5.2e-155 551.6 370 73.8
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.1e-154 550.4 375 73.6
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.5e-154 550.1 383 73.1
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 2.0e-154 549.7 371 73.6
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.0e-154 549.7 370 74.1
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.0e-154 549.7 381 71.7
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 2.6e-154 549.3 372 73.4
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.6e-154 549.3 370 73.5
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 3.3e-154 548.9 370 74.1
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 3.3e-154 548.9 375 73.1
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 4.4e-154 548.5 369 73.7
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 4.4e-154 548.5 373 72.7
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 5.7e-154 548.1 370 72.7
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 5.7e-154 548.1 370 72.7
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 5.7e-154 548.1 374 72.5
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 9.7e-154 547.4 370 73.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.3e-153 547.0 372 71.5
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-153 546.6 370 72.7
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.7e-153 546.6 379 71.5
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 5.3e-152 541.6 376 72.1
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 5.3e-152 541.6 375 72.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 7.0e-152 541.2 377 70.3
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.2e-151 540.4 369 71.8
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.0e-151 539.7 375 71.7
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 4.5e-151 538.5 370 72.4
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 5.9e-151 538.1 376 69.9
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.0e-150 537.3 370 71.6
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.0e-150 537.3 378 71.4
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.3e-150 537.0 375 70.9
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.2e-150 536.2 373 72.4
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 8.5e-150 534.3 379 69.4
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.5e-150 534.3 378 70.6
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 8.5e-150 534.3 374 70.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.1e-149 533.9 372 70.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.5e-149 533.5 371 70.9
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.5e-149 533.5 381 70.1
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.5e-149 533.5 376 70.7
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.9e-149 533.1 378 69.6
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 2.5e-149 532.7 373 71.8
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 7.2e-149 531.2 372 72.3
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 9.4e-149 530.8 373 71.3
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.1e-148 529.6 379 69.9
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 3.6e-148 528.9 378 69.8
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.4e-147 526.9 371 70.9
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 3.4e-146 522.3 380 69.2
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.3e-145 520.4 371 70.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 4.8e-145 518.5 370 68.6
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.8e-144 516.5 359 71.0
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 8.5e-142 507.7 374 67.9
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.5e-141 506.9 379 67.0
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 5.5e-141 505.0 369 69.6
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 7.2e-141 504.6 373 66.5
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.5e-138 496.9 354 68.6
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.5e-138 496.9 369 67.5
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.5e-138 494.6 346 70.8
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.1e-136 490.7 371 67.1
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.0e-135 486.5 333 73.9
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.5e-135 485.7 370 63.5
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 5.9e-135 485.0 340 70.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 3.3e-133 479.2 370 63.2
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.7e-132 475.3 375 62.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 7.0e-128 461.5 382 60.2
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.2e-127 460.7 375 61.3
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.2e-127 460.7 380 61.1
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 7.8e-127 458.0 378 60.8
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.2e-124 450.7 375 62.4
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-124 450.3 383 58.5
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.6e-124 450.3 367 61.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 6.2e-124 448.4 384 59.9
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-123 447.6 372 61.8
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 6.8e-123 444.9 386 58.8
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.9e-121 439.5 394 59.6
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 6.4e-121 438.3 373 59.2
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.4e-120 437.2 372 59.7
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.2e-120 436.0 380 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 4.1e-120 435.6 370 60.5
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 9.2e-120 434.5 373 61.4
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 7.3e-117 424.9 371 58.0
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 8.1e-116 421.4 315 68.9
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.2e-112 409.5 376 58.8
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.9e-109 400.2 379 55.9
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 4.0e-107 392.5 296 68.9
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.4e-106 389.4 373 55.2
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.2e-105 386.7 381 53.8
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 8.4e-105 384.8 372 56.5
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 2.4e-99 366.7 360 52.5
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-98 364.4 394 48.7
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-98 364.4 395 48.4
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 4.4e-98 362.5 389 50.9
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 7.6e-98 361.7 393 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.9e-96 357.1 365 51.5
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.9e-96 357.1 370 51.1
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.4e-88 330.9 324 52.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 7.9e-87 325.1 321 54.5
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.7e-86 322.0 303 56.4
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.3e-78 297.7 372 44.6
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 1.1e-77 294.7 246 61.8
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.5e-77 294.3 241 63.9
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 5.3e-75 285.8 228 61.4
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.6e-68 264.2 172 68.6
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.5e-61 240.4 326 48.5
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.8e-54 215.3 210 56.2
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.8e-54 215.3 210 56.2
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.8e-54 215.3 210 56.2
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.6e-53 213.8 112 88.4
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.9e-41 173.7 152 55.3
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.9e-41 173.7 152 55.3
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 6.5e-41 172.6 88 92.0
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 7.2e-40 169.1 88 89.8
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.4e-40 168.7 145 56.6
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.4e-40 168.7 145 56.6
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.4e-40 168.7 145 56.6
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 8.2e-36 155.6 126 61.9
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 9.1e-35 152.1 101 71.3
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 2.7e-34 150.6 92 72.8
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 3.5e-34 150.2 162 51.2
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 2.5e-32 144.1 76 85.5
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 9.4e-32 142.1 107 64.5
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 5.4e-27 126.3 137 54.7
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.7e-26 124.0 137 53.3
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 5.9e-26 122.9 137 54.0
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.3e-25 121.7 152 47.4
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 9.5e-24 115.5 127 54.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.4e-22 111.7 71 71.8
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 3.0e-22 110.5 54 92.6
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 4.0e-22 110.2 106 51.9
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 5.2e-22 109.8 54 90.7
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 2.8e-20 104.0 101 56.4
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.8e-19 101.3 124 50.8
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 3.5e-18 97.1 136 47.1
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 5.2e-14 83.2 46 78.3
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.7e-12 77.0 43 81.4
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 3.2e-11 73.9 123 43.9
FAN07G2282 Fragaria x ananassa HOM05D057918 ORTHO05D200951 4.0e-06 57.0 73 47.9


User provided reference genes

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