Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.5e-69 266.2 144 100.0
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.6e-57 223.8 146 88.4
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.7e-55 218.0 146 86.3
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.7e-55 218.0 146 86.3
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.2e-53 213.4 147 83.7
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 7.3e-48 194.1 146 79.5
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.9e-32 142.9 149 62.4
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 2.2e-20 102.8 64 78.1
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 2.2e-20 102.8 134 50.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 2.9e-20 102.4 124 52.4
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 8.4e-20 100.9 80 67.5
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 3.2e-19 99.0 64 78.1
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 4.2e-19 98.6 149 45.6
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.2e-18 97.1 140 50.7
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.2e-18 97.1 66 75.8
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.6e-18 96.7 151 47.0
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.6e-18 96.7 139 48.2
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.7e-17 93.2 126 50.8
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.7e-17 93.2 147 44.2
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 2.3e-17 92.8 152 44.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 3.0e-17 92.4 141 48.2
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 3.0e-17 92.4 64 73.4
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.1e-17 91.7 69 68.1
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 6.6e-17 91.3 142 44.4
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 8.7e-17 90.9 140 50.0
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 8.7e-17 90.9 126 46.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 8.7e-17 90.9 68 70.6
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-16 89.7 72 65.3
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.9e-16 89.7 72 65.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 3.3e-16 89.0 63 73.0
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.3e-16 89.0 144 44.4
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.3e-16 88.6 140 45.7
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 9.6e-16 87.4 105 52.4
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 9.6e-16 87.4 105 52.4
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 9.6e-16 87.4 105 52.4
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 9.6e-16 87.4 105 52.4
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 9.6e-16 87.4 105 52.4
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 9.6e-16 87.4 144 42.4
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 9.6e-16 87.4 108 49.1
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-15 87.0 72 62.5
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.3e-15 87.0 148 43.9
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.6e-15 86.7 64 68.8
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.6e-15 86.7 60 71.7
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-15 86.3 105 52.4
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-15 86.3 105 52.4
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 2.1e-15 86.3 64 70.3
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.8e-15 85.9 145 42.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.8e-15 85.9 116 50.9
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 3.6e-15 85.5 69 60.9
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.6e-15 85.5 72 62.5
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 3.6e-15 85.5 69 60.9
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 3.6e-15 85.5 69 60.9
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.6e-15 85.5 144 42.4
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.8e-15 85.1 151 46.4
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.8e-15 85.1 151 46.4
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 6.2e-15 84.7 61 67.2
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 8.1e-15 84.3 144 41.7
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.1e-14 84.0 61 68.9
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.4e-14 83.6 140 43.6
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.4e-14 82.8 54 75.9
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.4e-14 82.8 144 44.4
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 2.4e-14 82.8 61 67.2
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 4.0e-14 82.0 150 41.3
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 4.0e-14 82.0 61 67.2
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.2e-13 80.5 158 38.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.5e-13 80.1 75 56.0
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.6e-13 79.3 61 62.3
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.6e-13 79.3 61 62.3
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.6e-13 79.3 105 45.7
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 3.4e-13 79.0 95 46.3
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.4e-13 79.0 61 62.3
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 4.5e-13 78.6 61 60.7
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 4.5e-13 78.6 137 43.8
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 7.6e-13 77.8 63 65.1
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-13 77.8 80 56.2
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 7.6e-13 77.8 61 65.6
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 7.6e-13 77.8 72 58.3
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-12 77.0 67 62.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.3e-12 77.0 67 62.7
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.7e-12 76.6 104 49.0
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.7e-12 76.6 104 49.0
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.7e-12 76.6 106 50.0
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.7e-12 76.6 145 42.8
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.7e-12 76.6 147 41.5
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.2e-12 76.3 61 60.7
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.9e-12 75.9 101 47.5
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 2.9e-12 75.9 67 61.2
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.8e-12 75.5 110 44.5
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 3.8e-12 75.5 144 38.2
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 6.4e-12 74.7 66 59.1
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 6.4e-12 74.7 145 41.4
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-11 73.9 63 61.9
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.1e-11 73.9 126 38.9
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 4.2e-11 72.0 51 70.6
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.2e-11 72.0 101 46.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.2e-11 72.0 105 46.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 7.1e-11 71.2 55 63.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 7.1e-11 71.2 55 63.6
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-10 70.5 132 41.7
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-10 69.3 132 41.7
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 4.6e-10 68.6 99 46.5
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 6.0e-10 68.2 99 46.5
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 7.9e-10 67.8 98 39.8
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-09 66.6 123 43.9
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.3e-09 66.2 68 51.5
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 1.9e-08 63.2 71 47.9
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.3e-08 62.0 66 53.0
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 4.3e-08 62.0 108 44.4
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 4.3e-08 62.0 108 44.4
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 4.3e-08 62.0 108 44.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 2.8e-07 59.3 59 49.2
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 2.4e-06 56.2 48 54.2
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 6.9e-06 54.7 104 41.3


User provided reference genes

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