Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 2.1e-119 433.0 325 100.0
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.4e-99 367.1 329 84.8
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 4.6e-98 362.1 331 84.3
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 9.5e-96 354.4 329 79.3
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.1e-94 349.4 329 77.8
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 1.3e-65 254.2 326 71.8
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 1.5e-53 214.2 240 69.2
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 3.2e-51 206.5 240 63.3
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 4.3e-48 196.1 330 49.7
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 3.1e-46 189.9 331 57.7
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 9.0e-46 188.3 331 45.0
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 2.7e-42 176.8 333 51.1
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 3.5e-42 176.4 330 49.7
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 4.3e-40 169.5 326 51.2
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 2.5e-35 153.7 327 52.3
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 1.6e-34 151.0 331 35.3
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 2.3e-33 147.1 327 52.6
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 3.9e-33 146.4 313 48.2
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 6.7e-33 145.6 311 42.4
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 4.6e-26 122.9 309 35.6
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 3.0e-25 120.2 310 33.2
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 1.1e-24 118.2 296 47.6
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 1.3e-23 114.8 326 49.7
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.1e-22 111.7 331 31.7
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 2.4e-22 110.5 311 42.1
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 3.1e-22 110.2 316 38.0
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 1.5e-21 107.8 357 29.4
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 1.5e-21 107.8 357 29.4
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 5.9e-21 105.9 335 37.3
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.3e-20 104.8 364 29.4
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 3.8e-20 103.2 299 45.8
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 6.5e-20 102.4 320 45.3
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 7.2e-19 99.0 329 32.8
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 1.6e-18 97.8 325 45.8
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.6e-18 97.8 310 39.0
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 2.1e-18 97.4 325 44.3
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.9e-17 93.2 317 34.7
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 8.8e-17 92.0 324 43.8
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.6e-16 90.5 291 37.1
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.3e-16 90.1 291 38.5
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 2.8e-15 87.0 318 40.3
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 3.7e-15 86.7 234 48.3
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 3.7e-15 86.7 218 56.9
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 4.8e-15 86.3 153 38.6
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 4.8e-15 86.3 325 42.2
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 3.1e-14 83.6 321 41.7
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 7.0e-14 82.4 314 39.8
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 9.1e-14 82.0 158 39.2
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 2.0e-13 80.9 296 31.1
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 2.6e-13 80.5 159 40.9
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 3.5e-13 80.1 234 50.4
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 4.5e-13 79.7 306 37.6
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 5.9e-13 79.3 290 41.4
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.3e-12 78.2 296 36.1
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.3e-12 78.2 336 33.6
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 2.2e-12 77.4 320 40.9
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 3.8e-12 76.6 234 30.3
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 6.5e-12 75.9 234 30.8
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 6.5e-12 75.9 237 31.2
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 1.5e-11 74.7 234 30.3
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.5e-11 74.7 207 30.0
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 3.2e-11 73.6 226 39.4
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 1.2e-10 71.6 320 40.3
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 3.6e-10 70.1 298 40.6
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 1.8e-09 67.8 297 34.0
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.3e-09 67.4 157 38.2
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 3.0e-09 67.0 316 32.3
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 8.8e-09 65.5 207 28.0
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 8.8e-09 65.5 167 41.3
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.2e-08 65.1 167 41.3
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 1.5e-08 64.7 104 40.4
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.6e-08 63.9 159 39.6
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.3e-08 63.5 167 40.1
BraA10t42785Z Brassica rapa HOM05D006785 ORTHO05D006259 4.4e-08 63.2 225 47.1
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 5.7e-08 62.8 332 23.5
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 2.2e-07 60.8 315 37.8
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 2.2e-07 60.8 323 31.9
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 9.1e-06 55.5 177 41.2
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 9.1e-06 55.5 325 31.7


User provided reference genes

Program Settings