Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1706.4 896 100.0
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1669.4 922 96.2
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1585.9 931 90.3
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 0.0e+00 1579.7 931 89.3
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1577.0 931 90.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1576.6 931 89.2
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 0.0e+00 1237.2 931 71.5
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 0.0e+00 1195.3 933 68.9
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 9.7e-300 1033.5 879 60.9
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.2e-291 1005.7 876 59.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.7e-283 979.5 873 59.1
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.8e-282 976.1 947 58.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 4.4e-276 954.9 916 55.3
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.0e-273 946.0 877 56.1
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.5e-272 941.0 947 57.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.2e-271 938.7 947 57.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.4e-268 928.3 880 55.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 9.8e-268 927.2 879 54.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.2e-265 920.2 880 54.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.6e-262 909.8 935 53.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.1e-262 909.4 874 53.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 6.1e-262 907.9 888 53.4
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 8.0e-262 907.5 876 54.0
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.0e-261 907.1 874 54.0
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.3e-261 906.0 877 54.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.3e-261 906.0 877 54.0
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.2e-259 899.4 939 53.2
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 7.0e-258 894.4 874 53.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.5e-257 892.1 882 52.9
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.9e-257 891.3 892 54.1
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-256 889.8 943 55.9
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.3e-256 889.4 879 54.7
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 9.5e-255 884.0 875 54.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.2e-254 883.6 849 55.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.6e-254 882.1 890 54.3
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-254 881.7 881 52.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.8e-253 879.8 876 53.5
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.0e-252 876.3 879 53.0
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.3e-251 870.9 849 54.9
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.4e-250 870.2 883 54.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.6e-249 866.7 851 54.6
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.7e-248 863.2 934 50.2
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.0e-248 861.7 874 51.9
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.2e-246 857.1 849 54.2
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.1e-246 856.3 881 52.9
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 8.1e-246 854.4 907 51.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.3e-245 852.8 849 54.8
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 4.0e-245 852.0 947 53.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.2e-243 846.3 873 51.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.9e-242 843.2 876 51.4
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 4.1e-242 842.0 877 51.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.9e-240 835.5 759 56.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.5e-239 833.6 755 58.5
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.2e-238 830.5 880 51.1
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.8e-238 829.3 875 50.2
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.6e-238 828.9 889 50.4
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.1e-237 827.4 832 52.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.3e-235 820.5 851 53.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.7e-235 820.1 876 50.3
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 4.9e-235 818.5 884 50.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-233 812.8 886 50.5
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.5e-233 812.4 874 51.6
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.0e-232 809.3 876 51.1
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 6.6e-232 808.1 875 50.6
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.8e-230 802.7 897 49.4
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.2e-230 801.6 872 50.3
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 3.1e-229 799.3 908 49.9
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.4e-221 773.1 848 51.1
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.2e-218 762.7 939 48.5
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.2e-218 762.3 907 47.2
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.5e-217 759.2 943 45.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.3e-215 752.3 886 49.0
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.1e-214 750.0 865 47.1
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.2e-210 735.7 904 46.0
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 4.3e-207 725.7 899 47.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.5e-203 711.8 1325 35.8
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.5e-201 706.1 865 44.0
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 3.5e-201 706.1 852 45.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 7.9e-201 704.9 852 47.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-200 704.5 871 43.6
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.1e-197 692.6 876 45.0
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.3e-197 692.2 860 46.2
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.7e-195 687.2 864 44.7
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 7.2e-194 681.8 772 54.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.1e-189 667.9 882 42.3
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-188 664.5 670 54.3
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.8e-187 659.4 851 45.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.6e-183 646.7 860 45.2
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.1e-178 631.3 523 61.6
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 6.1e-177 625.5 865 42.5
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-176 624.8 853 42.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.0e-176 624.8 853 42.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.8e-176 624.0 851 43.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.0e-176 623.2 846 43.3
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 8.8e-176 621.7 853 42.2
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 8.8e-176 621.7 853 42.2
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-175 621.3 853 42.1
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.0e-175 620.5 855 43.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.7e-175 619.0 757 46.6
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 7.4e-175 618.6 862 42.2
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 8.2e-174 615.1 830 42.3
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 5.9e-172 609.0 387 80.4
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.1e-170 604.7 850 41.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.1e-169 599.0 827 42.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-168 597.4 850 41.8
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.3e-167 593.2 898 39.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 4.4e-167 592.8 1378 32.2
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.3e-166 591.3 855 41.6
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.9e-163 580.1 840 42.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.7e-161 572.8 865 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 8.8e-160 568.5 876 38.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 6.5e-155 552.4 596 52.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 5.2e-152 542.7 894 37.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.5e-151 541.2 869 37.9
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.0e-147 528.5 464 58.2
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.8e-141 507.7 410 62.4
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.2e-141 506.9 310 80.6
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 3.1e-128 463.8 409 58.4
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 4.3e-122 443.4 653 41.2
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.1e-121 441.0 336 66.7
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.6e-114 416.4 419 53.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 7.3e-114 416.0 320 64.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.5e-103 381.7 434 48.4
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.8e-103 379.8 360 56.1
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-98 365.2 781 32.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.3e-97 362.1 484 43.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.5e-87 328.6 363 49.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 2.2e-86 324.7 332 52.7
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.2e-86 324.7 1086 25.9
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.5e-85 321.2 383 48.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-84 318.9 502 39.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.3e-78 298.9 271 57.2
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.7e-76 291.2 470 37.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.3e-73 282.3 631 32.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.6e-68 265.4 382 40.8
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.1e-67 260.4 347 44.4
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 5.7e-66 256.9 182 65.9
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.3e-54 219.2 177 61.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-54 218.8 416 33.2
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 6.5e-54 216.9 173 63.6
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 2.6e-50 204.9 245 44.9
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.7e-49 202.2 468 36.1
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.1e-48 198.0 283 39.9
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-46 192.6 382 38.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.7e-44 184.9 344 34.0
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.4e-42 177.9 139 63.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.1e-40 171.4 146 60.3
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-38 166.0 282 40.4
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 5.0e-38 164.1 132 62.1
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.9e-37 162.2 158 56.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.0e-35 154.8 118 62.7
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.2e-34 152.9 180 51.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.7e-33 149.1 361 29.4
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 3.5e-31 141.4 219 37.4
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 3.5e-31 141.4 103 66.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 3.8e-30 137.9 88 67.0
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.9e-29 135.6 238 45.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 3.6e-28 131.3 89 69.7
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 3.6e-28 131.3 210 39.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 5.2e-27 127.5 127 46.5
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.8e-27 127.1 133 49.6
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 2.0e-26 125.6 139 66.2
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.7e-25 122.5 124 50.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.9e-25 120.9 185 48.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.9e-25 120.9 79 70.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.2e-24 116.7 81 67.9
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 8.6e-22 110.2 81 65.4
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 1.9e-21 109.0 94 55.3
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.5e-21 108.6 103 52.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.3e-19 102.1 160 37.5
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.8e-19 100.5 115 47.8
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 2.0e-18 99.0 87 49.4
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.4e-16 92.8 145 36.6
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.8e-11 75.9 59 57.6
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.5e-10 70.5 53 60.4
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.0e-07 60.8 62 53.2
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 1.0e-06 60.1 91 36.3
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 1.3e-06 59.7 81 48.1
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.3e-06 58.9 84 44.0
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 3.0e-06 58.5 154 37.0
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 3.9e-06 58.2 73 42.5
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 5.1e-06 57.8 321 22.1


User provided reference genes

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