Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0150541 Rosa chinensis HOM05D003769 ORTHO05D004521 6.4e-51 203.8 100 100.0
RcHm_v2.0_Chr3g0491251 Rosa chinensis HOM05D003769 ORTHO05D004521 8.1e-30 133.7 97 74.2
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 2.6e-28 128.6 97 72.2
RcHm_v2.0_Chr5g0051891 Rosa chinensis HOM05D003769 ORTHO05D004521 9.9e-28 126.7 97 71.1
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 1.6e-25 119.4 97 69.1
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.6e-25 119.4 97 69.1
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.6e-25 119.4 97 69.1
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.6e-25 119.4 97 69.1
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 4.6e-25 117.9 97 68.0
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 5.6e-23 110.9 97 61.9
QL10p023927 Quercus lobata HOM05D003769 ORTHO05D004521 1.1e-21 106.7 97 58.8
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 6.9e-21 104.0 97 56.7
QL04p048687 Quercus lobata HOM05D003769 ORTHO05D004521 6.9e-21 104.0 97 57.7
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 2.6e-20 102.1 97 57.7
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 3.4e-20 101.7 97 55.7
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 4.5e-20 101.3 97 54.6
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 7.6e-20 100.5 97 54.6
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 9.9e-20 100.1 97 53.6
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 2.9e-19 98.6 97 53.6
Haze_18649 Corylus avellana HOM05D003769 ORTHO05D004521 2.9e-19 98.6 97 55.7
Haze_18651 Corylus avellana HOM05D003769 ORTHO05D004521 2.9e-19 98.6 97 55.7
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 8.4e-19 97.1 98 55.1
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 8.4e-19 97.1 97 52.6
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 8.4e-19 97.1 97 51.5
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 8.4e-19 97.1 97 51.5
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 8.4e-19 97.1 97 52.6
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 8.4e-19 97.1 97 52.6
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 1.1e-18 96.7 97 52.6
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 2.4e-18 95.5 97 52.6
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 2.4e-18 95.5 97 52.6
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 3.2e-18 95.1 97 51.5
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 4.2e-18 94.7 97 55.7
Glyma.05G233100 Glycine max HOM05D003769 ORTHO05D004521 4.2e-18 94.7 97 51.5
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 4.2e-18 94.7 97 52.6
Psat7g009720 Pisum sativum HOM05D003769 ORTHO05D004521 5.4e-18 94.4 97 50.5
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 7.1e-18 94.0 97 51.5
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.2e-17 93.2 97 51.5
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 1.2e-17 93.2 97 53.6
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 1.6e-17 92.8 97 50.5
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 1.6e-17 92.8 97 53.6
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 2.7e-17 92.0 97 51.5
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 6.0e-17 90.9 97 50.5
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 1.0e-16 90.1 97 50.5
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 1.0e-16 90.1 97 52.6
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 1.3e-16 89.7 97 47.4
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 1.8e-16 89.4 97 50.5
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 1.8e-16 89.4 97 49.5
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 3.0e-16 88.6 97 53.6
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 3.0e-16 88.6 97 48.5
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 3.9e-16 88.2 97 48.5
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 3.9e-16 88.2 97 50.5
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 5.1e-16 87.8 97 48.5
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 6.7e-16 87.4 97 49.5
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 6.7e-16 87.4 97 52.6
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 8.7e-16 87.0 97 49.5
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 1.5e-15 86.3 97 48.5
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.5e-15 86.3 97 53.6
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 1.9e-15 85.9 97 50.5
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 2.5e-15 85.5 102 53.9
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 2.5e-15 85.5 102 53.9
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 2.5e-15 85.5 97 48.5
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 3.3e-15 85.1 97 48.5
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 1.6e-14 82.8 97 51.5
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 2.1e-14 82.4 97 44.3
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-14 82.4 97 50.5
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-14 82.4 97 50.5
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 3.7e-14 81.6 97 48.5
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 4.8e-14 81.3 97 49.5
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 8.1e-14 80.5 97 48.5
Cpa.g.sc13.18 Carica papaya HOM05D003769 ORTHO05D004521 1.1e-13 80.1 58 63.8
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 4.0e-13 78.2 97 46.4
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 4.0e-13 78.2 97 47.4
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 6.9e-13 77.4 97 50.5
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 2.6e-12 75.5 97 44.3
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 4.5e-12 74.7 97 43.3
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 5.8e-12 74.3 97 44.3
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 1.0e-11 73.6 97 42.3
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 3.8e-11 71.6 97 39.2
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
C07p34210 Brassica napus HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BolC7t43936H Brassica oleracea HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BolC7t43948H Brassica oleracea HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 4.9e-11 71.2 97 43.3
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 4.9e-11 71.2 99 45.5
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 1.1e-10 70.1 97 43.3
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 1.1e-10 70.1 97 43.3
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.4e-10 69.7 97 41.2
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 1.4e-10 69.7 97 47.4
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.5e-10 68.9 97 44.3
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 3.2e-10 68.6 97 43.3
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 4.2e-10 68.2 97 42.3
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 5.5e-10 67.8 97 41.2
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.2e-09 66.6 97 39.2
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.6e-09 66.2 97 43.3
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 2.1e-09 65.9 97 41.2
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 6.0e-09 64.3 97 38.1
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 7.9e-09 63.9 44 70.5
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 1.3e-08 63.2 97 39.2
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 1.3e-08 63.2 97 39.2
unitig_8.g3057 Utricularia gibba HOM05D003769 ORTHO05D004521 1.8e-08 62.8 97 40.2
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.3e-08 62.4 97 38.1
AUR62043128 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.3e-08 62.4 97 38.1
AUR62043749 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.3e-08 62.4 97 38.1
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 5.1e-08 61.2 97 44.3
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 6.7e-08 60.8 98 43.9
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 6.7e-08 60.8 99 42.4
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.9e-07 59.3 97 41.2
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 2.1e-06 55.8 99 40.4
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.1e-06 55.8 97 39.2
BcaC06g31146 Brassica carinata HOM05D003769 ORTHO05D004521 4.8e-06 54.7 37 67.6


User provided reference genes

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