Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147481 Rosa chinensis HOM05D006401 ORTHO05D007864 1.2e-27 125.6 55 100.0
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 5.7e-09 63.5 36 72.2
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 1.6e-08 62.0 36 69.4
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.6e-08 62.0 36 69.4
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.6e-08 62.0 36 69.4
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.6e-08 62.0 36 69.4
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 4.1e-07 57.4 36 66.7
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 5.3e-07 57.0 36 66.7
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 9.0e-07 56.2 36 63.9
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 2.6e-06 54.7 34 61.8
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 2.6e-06 54.7 36 58.3
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 2.6e-06 54.7 34 64.7
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 2.6e-06 54.7 39 56.4
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 3.4e-06 54.3 37 62.2
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 3.4e-06 54.3 39 59.0
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 3.4e-06 54.3 34 61.8
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 4.5e-06 53.9 34 58.8
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 4.5e-06 53.9 34 58.8
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 4.5e-06 53.9 34 64.7
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 4.5e-06 53.9 36 61.1
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 5.9e-06 53.5 36 58.3
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 5.9e-06 53.5 34 64.7
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 5.9e-06 53.5 34 58.8
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 5.9e-06 53.5 36 61.1
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 5.9e-06 53.5 34 61.8
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 5.9e-06 53.5 36 58.3
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 5.9e-06 53.5 34 64.7
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 7.7e-06 53.1 34 61.8
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 7.7e-06 53.1 34 58.8
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 7.7e-06 53.1 34 61.8
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 7.7e-06 53.1 34 58.8
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 7.7e-06 53.1 34 58.8
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 7.7e-06 53.1 36 61.1
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 58.8
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 1.0e-05 52.8 34 61.8


User provided reference genes

Program Settings