Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1386.3 695 100.0
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1117.8 695 81.6
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1106.7 695 80.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1105.1 695 80.9
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1102.8 695 80.6
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 2.0e-220 769.6 758 57.5
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 8.5e-219 764.2 763 57.1
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 6.7e-216 754.6 749 57.1
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 2.4e-213 746.1 745 55.6
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 9.1e-213 744.2 728 55.8
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 2.6e-212 742.7 742 55.5
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 5.0e-211 738.4 765 55.2
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 6.5e-211 738.0 655 59.5
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 1.1e-210 737.3 753 55.8
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 1.6e-209 733.4 763 54.7
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 1.0e-208 730.7 766 54.6
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 1.0e-208 730.7 754 53.3
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.3e-208 729.6 652 60.7
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 3.0e-208 729.2 753 54.4
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.8e-208 728.0 773 55.4
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 8.8e-208 727.6 744 53.8
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.2e-207 727.2 750 55.2
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 3.4e-207 725.7 750 54.3
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 5.7e-207 724.9 753 53.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 7.5e-207 724.5 761 53.9
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 1.3e-206 723.8 642 58.4
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 1.7e-206 723.4 640 58.6
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 2.8e-206 722.6 753 53.7
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 2.8e-206 722.6 749 53.8
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 4.8e-206 721.8 749 54.1
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 1.1e-205 720.7 737 54.4
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 3.1e-205 719.2 752 54.1
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 2.0e-204 716.5 746 53.8
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 2.7e-204 716.1 757 53.2
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.5e-204 715.7 737 53.5
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 3.5e-204 715.7 653 58.2
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 5.9e-204 714.9 750 53.7
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.0e-203 714.1 638 58.8
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 1.0e-203 714.1 747 53.5
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 1.3e-203 713.8 646 58.2
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 1.7e-203 713.4 763 52.9
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 2.2e-203 713.0 742 53.8
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 3.8e-203 712.2 759 53.4
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 6.5e-203 711.4 731 52.9
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.5e-202 710.3 800 53.5
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.9e-202 709.9 764 53.5
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 5.5e-202 708.4 764 53.5
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 4.7e-201 705.3 748 52.7
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 8.0e-201 704.5 742 52.2
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 1.4e-200 703.7 655 56.9
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.3e-200 703.0 757 52.0
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 3.0e-200 702.6 681 55.4
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 4.0e-200 702.2 761 52.3
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.2e-199 700.7 730 52.3
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 1.5e-199 700.3 740 52.6
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 2.0e-199 699.9 737 52.2
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 2.0e-199 699.9 740 52.0
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 2.6e-199 699.5 659 57.4
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.7e-198 695.7 743 51.8
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.7e-198 695.7 743 51.8
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 1.1e-197 694.1 736 52.6
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.8e-197 693.3 639 57.1
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 3.1e-197 692.6 525 65.0
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.1e-197 692.6 752 52.5
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 4.1e-197 692.2 766 50.5
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 5.4e-197 691.8 515 67.0
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 7.0e-197 691.4 746 52.1
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 7.0e-197 691.4 740 50.7
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 9.1e-197 691.0 515 66.0
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 2.0e-196 689.9 745 50.9
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 5.9e-196 688.3 740 51.5
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.3e-195 687.2 748 52.9
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 8.6e-195 684.5 737 52.1
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.5e-194 683.7 742 52.2
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 4.2e-194 682.2 737 51.8
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.2e-193 680.6 730 51.6
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 3.6e-193 679.1 655 55.6
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 3.0e-192 676.0 737 50.1
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 4.0e-192 675.6 764 51.8
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.9e-190 669.5 653 55.0
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 3.2e-189 666.0 704 53.0
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 2.9e-187 659.4 761 49.7
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 8.6e-187 657.9 754 50.4
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 3.3e-186 656.0 742 51.8
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.3e-184 649.8 732 52.0
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.3e-184 649.8 751 50.5
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 6.4e-182 641.7 762 50.5
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 8.3e-182 641.3 762 50.5
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.6e-175 619.8 752 48.3
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 3.4e-175 619.4 663 52.2
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 7.5e-175 618.2 915 43.2
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 7.1e-173 611.7 748 47.6
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 7.3e-170 601.7 690 46.8
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 9.5e-170 601.3 629 52.3
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 5.8e-167 592.0 679 50.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.4e-165 585.5 525 61.3
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.4e-160 570.9 746 46.0
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 7.6e-159 565.1 752 46.4
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.7e-158 563.9 747 44.8
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.4e-157 560.1 723 44.5
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 2.1e-156 557.0 531 52.0
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.1e-156 557.0 729 46.1
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.2e-150 537.0 745 44.7
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.3e-147 526.9 737 45.5
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.4e-144 517.7 514 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 6.0e-140 502.3 631 44.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.1e-122 444.9 739 40.1
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 8.2e-121 438.7 334 62.6
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.5e-93 347.4 453 51.4
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.6e-92 344.7 400 46.2
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 3.3e-77 293.9 575 31.8
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.2e-76 292.0 443 43.6
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 6.4e-73 279.6 656 30.9
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 5.9e-71 273.1 184 71.7
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 7.3e-69 266.2 680 29.9
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.4e-66 256.9 215 54.9
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 4.9e-65 253.4 239 51.0
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.6e-42 177.9 127 63.8
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.6e-36 157.5 132 60.6
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.4e-35 155.6 130 62.3
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 8.4e-33 146.4 156 58.3
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 3.5e-31 141.0 109 59.6
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 4.6e-23 114.0 225 39.6
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.1e-21 109.4 273 37.7
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 4.2e-16 90.9 486 21.4
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 7.1e-16 90.1 500 21.8
SMO356G0255 Selaginella moellendorffii HOM05D002279 ORTHO05D002644 4.6e-15 87.4 508 21.5
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 6.0e-15 87.0 56 69.6
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 2.3e-14 85.1 354 23.2
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 6.7e-14 83.6 352 22.7
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 8.7e-14 83.2 61 62.3
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 5.7e-13 80.5 522 20.7
Pp3c1_23160 Physcomitrium patens HOM05D002279 ORTHO05D002644 7.4e-13 80.1 600 21.5
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.6e-12 79.0 127 37.0
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 3.7e-12 77.8 491 20.2
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 3.7e-12 77.8 377 23.1
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 3.7e-12 77.8 372 22.8
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 4.8e-12 77.4 500 21.0
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.2e-12 76.6 55 63.6
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.1e-11 76.3 500 21.0
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 1.4e-11 75.9 375 22.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 3.1e-11 74.7 598 22.7
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 4.1e-11 74.3 88 54.5
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 1.2e-10 72.8 491 20.0
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 1.5e-10 72.4 337 22.0
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 2.0e-10 72.0 492 20.7
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 7.6e-10 70.1 381 19.9
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 1.3e-09 69.3 494 21.3
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 2.9e-09 68.2 500 21.4
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 6.5e-09 67.0 510 18.8
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 8.5e-09 66.6 505 20.4
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 8.5e-09 66.6 490 21.6
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 3.2e-08 64.7 233 35.2
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-07 62.8 233 34.8
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.6e-07 62.4 183 34.4
EL10Ac8g19790 Beta vulgaris HOM05D002279 ORTHO05D002644 1.8e-06 58.9 496 21.0
CSS0033738 Camellia sinensis var. sinensis HOM05D002279 ORTHO05D002644 8.7e-06 56.6 140 23.6
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 8.7e-06 56.6 184 34.8


User provided reference genes

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