Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0145491 Rosa chinensis HOM05D001129 ORTHO05D019282 1.1e-75 286.6 144 100.0
RcHm_v2.0_Chr3g0492731 Rosa chinensis HOM05D001129 ORTHO05D019282 3.7e-36 155.2 118 72.0
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 7.8e-34 147.5 113 69.9
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-22 110.2 83 65.1
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.0e-22 108.6 83 63.9
RcHm_v2.0_Chr1g0321501 Rosa chinensis HOM05D001129 ORTHO05D019282 6.9e-22 107.8 62 85.5
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.4e-21 105.1 83 62.7
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.4e-21 105.1 83 62.7
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 1.7e-20 103.2 78 65.4
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 3.8e-20 102.1 99 58.6
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-19 100.1 116 49.1
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-19 100.1 116 49.1
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.9e-19 99.8 82 58.5
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 5.4e-19 98.2 84 59.5
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 5.4e-19 98.2 91 52.7
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 5.4e-19 98.2 87 57.5
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 7.1e-19 97.8 83 59.0
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 7.1e-19 97.8 93 54.8
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.7e-18 95.9 116 48.3
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 3.5e-18 95.5 84 58.3
FAN09G1141 Fragaria x ananassa HOM05D001129 ORTHO05D025614 4.6e-18 95.1 79 59.5
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 4.6e-18 95.1 134 44.0
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 7.8e-18 94.4 92 55.4
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-17 94.0 82 56.1
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.0e-17 94.0 83 55.4
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 1.3e-17 93.6 84 57.1
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-17 93.6 82 56.1
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 1.3e-17 93.6 92 54.3
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.3e-17 93.6 107 44.9
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.7e-17 93.2 92 54.3
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.7e-17 93.2 83 55.4
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 2.3e-17 92.8 84 57.1
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 2.3e-17 92.8 112 44.6
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.3e-17 92.8 112 44.6
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.3e-17 92.8 108 46.3
FAN13G3149 Fragaria x ananassa HOM05D001129 ORTHO05D025614 3.0e-17 92.4 77 59.7
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 3.0e-17 92.4 83 54.2
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 3.0e-17 92.4 84 57.1
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-17 91.7 86 54.7
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 5.1e-17 91.7 83 54.2
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.6e-17 91.3 82 54.9
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 6.6e-17 91.3 79 54.4
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 8.7e-17 90.9 84 53.6
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 8.7e-17 90.9 84 56.0
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.5e-16 90.1 78 55.1
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.9e-16 89.7 83 54.2
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 1.9e-16 89.7 101 46.5
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 2.5e-16 89.4 83 56.6
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 2.5e-16 89.4 83 54.2
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 3.3e-16 89.0 83 54.2
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 3.3e-16 89.0 84 54.8
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.3e-16 89.0 79 53.2
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 3.3e-16 89.0 84 54.8
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 4.3e-16 88.6 84 53.6
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.3e-16 88.6 112 43.8
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 5.6e-16 88.2 99 48.5
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 5.6e-16 88.2 84 54.8
Cpa.g.sc2.304 Carica papaya HOM05D001129 ORTHO05D003814 7.3e-16 87.8 78 57.7
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 7.3e-16 87.8 83 51.8
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 7.3e-16 87.8 84 48.8
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 7.3e-16 87.8 79 54.4
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.3e-15 87.0 82 52.4
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.3e-15 87.0 83 50.6
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.3e-15 87.0 84 48.8
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.3e-15 87.0 83 53.0
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.1e-15 86.3 83 51.8
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.1e-15 86.3 79 54.4
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 2.1e-15 86.3 83 53.0
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 2.1e-15 86.3 84 52.4
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 2.8e-15 85.9 83 55.4
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 2.8e-15 85.9 84 51.2
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 2.8e-15 85.9 82 53.7
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 2.8e-15 85.9 84 48.8
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 3.6e-15 85.5 83 53.0
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 4.8e-15 85.1 83 53.0
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 6.2e-15 84.7 80 52.5
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 6.2e-15 84.7 84 52.4
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 6.2e-15 84.7 84 48.8
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 6.2e-15 84.7 79 50.6
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 6.2e-15 84.7 105 41.9
RcHm_v2.0_Chr1g0333951 Rosa chinensis HOM05D001129 ORTHO05D003814 8.1e-15 84.3 87 51.7
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.4e-14 83.6 82 50.0
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.4e-14 83.6 83 49.4
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.4e-14 83.6 83 48.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.4e-14 83.6 79 50.6
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 1.8e-14 83.2 84 51.2
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 4.0e-14 82.0 83 50.6
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 4.0e-14 82.0 78 53.8
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 4.0e-14 82.0 83 50.6
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 4.0e-14 82.0 83 50.6
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 5.3e-14 81.6 78 51.3
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 5.3e-14 81.6 79 50.6
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 6.9e-14 81.3 84 50.0
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 9.0e-14 80.9 79 49.4
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.2e-13 80.5 79 50.6
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.2e-13 80.5 107 41.1
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-13 80.5 67 56.7
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.8e-13 78.2 84 47.6
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 5.8e-13 78.2 79 49.4
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 7.6e-13 77.8 78 48.7
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 9.9e-13 77.4 94 42.6
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 9.9e-13 77.4 74 48.6
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.3e-12 77.0 87 48.3
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 4.9e-12 75.1 80 43.8
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 8.4e-12 74.3 67 55.2
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 8.4e-12 74.3 101 43.6
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 8.4e-12 74.3 83 48.2
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 8.4e-12 74.3 79 44.3
HPP92_006786 Vanilla planifolia HOM05D001129 ORTHO05D003814 8.4e-12 74.3 85 43.5
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 1.1e-11 73.9 87 42.5
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.1e-11 73.9 83 47.0
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.4e-11 73.6 85 44.7
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 2.4e-11 72.8 90 42.2
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 2.4e-11 72.8 94 43.6
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 2.4e-11 72.8 63 63.5
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 3.2e-11 72.4 90 41.1
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 3.2e-11 72.4 90 41.1
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 3.2e-11 72.4 90 43.3
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 4.2e-11 72.0 79 43.0
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 4.2e-11 72.0 87 42.5
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 4.2e-11 72.0 90 41.1
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 4.2e-11 72.0 87 42.5
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 5.4e-11 71.6 79 43.0
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 7.1e-11 71.2 79 43.0
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 7.1e-11 71.2 90 41.1
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 7.1e-11 71.2 90 41.1
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 7.1e-11 71.2 90 41.1
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 7.1e-11 71.2 90 41.1
A09p66710 Brassica napus HOM05D001129 ORTHO05D003814 9.3e-11 70.9 90 41.1
Ca_23248_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 1.6e-10 70.1 83 47.0
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.6e-10 70.1 94 35.1
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 2.1e-10 69.7 87 41.4
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 2.1e-10 69.7 87 41.4
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 2.1e-10 69.7 87 41.4
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 2.7e-10 69.3 78 42.3
BraA09t42010Z Brassica rapa HOM05D001129 ORTHO05D003814 3.5e-10 68.9 90 40.0
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 3.5e-10 68.9 94 38.3
Oeu055223.1 Olea europaea HOM05D001129 ORTHO05D003814 4.6e-10 68.6 83 41.0
Psat2g172400 Pisum sativum HOM05D001129 ORTHO05D003814 3.0e-09 65.9 67 52.2
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 3.9e-09 65.5 90 40.0
SEGI_03863 Sequoiadendron giganteum HOM05D001129 ORTHO05D019282 6.7e-09 64.7 83 39.8
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 1.3e-07 60.5 90 37.8
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 4.0e-06 55.5 110 30.9
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 9.0e-06 54.3 78 39.7


User provided reference genes

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