Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0145351 Rosa chinensis HOM05D000002 ORTHO05D006339 1.0e-54 216.5 105 100.0
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.7e-36 155.2 82 87.8
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.7e-36 155.2 82 87.8
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 7.9e-36 153.7 82 86.6
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.0e-35 153.3 82 86.6
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 1.4e-35 152.9 82 87.8
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 3.0e-35 151.8 85 83.5
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 2.0e-34 149.1 85 80.0
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 3.7e-33 144.8 85 76.5
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 3.7e-33 144.8 85 76.5
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 8.2e-33 143.7 83 77.1
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 1.1e-32 143.3 83 75.9
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 1.1e-32 143.3 85 76.5
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 1.1e-32 143.3 82 78.0
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 1.4e-32 142.9 82 76.8
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 1.8e-32 142.5 82 76.8
Lj6A285T32 Lonicera japonica HOM05D000002 ORTHO05D006339 1.8e-32 142.5 83 75.9
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 1.8e-32 142.5 82 76.8
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 2.4e-32 142.1 85 76.5
TAR369G0907 Trochodendron aralioides HOM05D000002 ORTHO05D006339 2.4e-32 142.1 85 75.3
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.1e-32 141.4 85 75.3
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.1e-32 141.4 85 75.3
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 4.1e-32 141.4 83 75.9
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 4.1e-32 141.4 83 75.9
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 4.1e-32 141.4 82 76.8
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 4.1e-32 141.4 85 74.1
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 4.1e-32 141.4 85 74.1
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 5.3e-32 141.0 82 76.8
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 5.3e-32 141.0 82 76.8
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 7.0e-32 140.6 82 78.0
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 7.0e-32 140.6 81 76.5
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 9.1e-32 140.2 82 75.6
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 9.1e-32 140.2 82 76.8
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 1.2e-31 139.8 85 75.3
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 1.2e-31 139.8 82 74.4
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 1.6e-31 139.4 82 75.6
Cpa.g.c29901 Carica papaya HOM05D000002 ORTHO05D006339 2.0e-31 139.0 82 73.2
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 2.0e-31 139.0 85 74.1
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 2.0e-31 139.0 85 75.3
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 2.6e-31 138.7 83 74.7
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 2.6e-31 138.7 80 76.2
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 2.6e-31 138.7 85 72.9
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 4.5e-31 137.9 82 75.6
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 4.5e-31 137.9 82 75.6
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 4.5e-31 137.9 82 74.4
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 7.7e-31 137.1 82 74.4
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 7.7e-31 137.1 83 74.7
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 1.0e-30 136.7 78 78.2
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 1.3e-30 136.3 82 72.0
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 1.3e-30 136.3 82 75.6
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 1.3e-30 136.3 82 74.4
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 1.3e-30 136.3 82 73.2
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 2.2e-30 135.6 82 72.0
Ah.07g204660 Amaranthus hybridus HOM05D000002 ORTHO05D006339 2.9e-30 135.2 81 71.6
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 5.0e-30 134.4 82 70.7
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 5.0e-30 134.4 76 77.6
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 5.0e-30 134.4 77 76.6
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 5.0e-30 134.4 77 76.6
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 5.0e-30 134.4 82 72.0
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 5.0e-30 134.4 82 73.2
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 6.5e-30 134.0 77 76.6
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 8.5e-30 133.7 81 71.6
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 8.5e-30 133.7 82 70.7
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 1.1e-29 133.3 85 70.6
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 1.1e-29 133.3 85 69.4
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.1e-29 133.3 81 74.1
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 1.1e-29 133.3 82 73.2
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 1.5e-29 132.9 82 73.2
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.5e-29 132.9 79 74.7
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 67.1
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 72.0
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 70.7
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 70.7
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 70.7
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 70.7
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 1.9e-29 132.5 82 69.5
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 2.5e-29 132.1 77 76.6
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 3.2e-29 131.7 82 69.5
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 3.2e-29 131.7 82 69.5
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 3.2e-29 131.7 78 74.4
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 3.2e-29 131.7 84 73.8
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 5.5e-29 131.0 82 70.7
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 7.2e-29 130.6 85 70.6
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 9.4e-29 130.2 78 74.4
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 9.4e-29 130.2 82 69.5
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 1.2e-28 129.8 82 67.1
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-28 129.8 85 71.8
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 4.7e-28 127.9 82 70.7
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 4.7e-28 127.9 80 68.8
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 1.4e-27 126.3 82 67.1
ATR0626G089 Amborella trichopoda HOM05D000002 ORTHO05D006339 3.0e-27 125.2 80 68.8
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 5.2e-27 124.4 82 65.9
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 5.2e-27 124.4 82 68.3
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 1.1e-26 123.2 77 68.8
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 2.0e-26 122.5 82 64.6
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 3.3e-26 121.7 83 63.9
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 9.7e-26 120.2 78 67.9
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 1.7e-25 119.4 83 62.7
Potri.018G148066 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.2e-25 119.0 82 62.2
MBI15_g00655_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 2.8e-25 118.6 109 54.1
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 3.7e-25 118.2 78 65.4
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 1.4e-24 116.3 82 61.0
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.4e-24 115.5 82 59.8
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 2.7e-23 112.1 77 66.2
TPR.G23483 Trifolium pratense HOM05D000002 ORTHO05D006339 2.9e-22 108.6 82 61.0
SHI03137 Sapria himalayana HOM05D000002 ORTHO05D006339 8.5e-22 107.1 80 53.8
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 8.5e-22 107.1 91 58.2
Pp3c7_4500 Physcomitrium patens HOM05D000002 ORTHO05D006339 8.3e-17 90.5 69 58.0
Mapoly0004s0293 Marchantia polymorpha HOM05D000002 ORTHO05D006339 4.1e-16 88.2 72 56.9
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 3.5e-15 85.1 82 53.7
SMO361G0562 Selaginella moellendorffii HOM05D000002 ORTHO05D006339 2.2e-14 82.4 67 52.2
AagrBONN_evm.TU.Sc2ySwM_340.348 Anthoceros agrestis HOM05D000002 ORTHO05D006339 3.8e-14 81.6 69 53.6
Hma1.2p1_0269F.1_g107860 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 3.8e-14 81.6 50 70.0
CBR_g5707 Chara braunii HOM05D000002 ORTHO05D006339 2.0e-07 59.3 67 40.3
unitig_747.g21292 Utricularia gibba HOM05D000002 ORTHO05D006339 2.0e-07 59.3 37 70.3
CDE07G0184 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 3.8e-06 55.1 36 66.7


User provided reference genes

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