Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 0.0e+00 1246.1 704 100.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1144.8 704 93.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 0.0e+00 1142.9 704 93.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1142.9 704 92.3
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1127.1 706 91.2
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 0.0e+00 1123.2 705 92.2
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.2e-278 962.2 716 80.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 5.3e-277 957.6 717 79.5
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 5.9e-260 901.0 716 77.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 3.7e-254 881.7 706 76.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.0e-219 765.8 724 68.2
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.2e-215 753.8 611 73.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.1e-208 730.7 736 67.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.0e-207 726.5 713 67.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.8e-206 722.2 748 66.4
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.8e-206 722.2 593 73.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 8.4e-206 721.1 726 65.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.4e-206 721.1 514 74.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-205 720.7 709 68.0
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.4e-205 719.5 514 74.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.2e-205 719.2 525 75.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.2e-205 718.8 590 73.2
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.1e-205 718.0 524 75.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.7e-204 716.1 734 64.3
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 4.6e-204 715.3 522 72.4
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-204 715.3 738 66.5
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-202 710.7 524 74.6
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 5.6e-202 708.4 708 64.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.1e-201 706.4 715 63.4
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.8e-201 706.1 720 59.6
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 5.3e-200 701.8 524 74.2
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 9.0e-200 701.0 524 74.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-199 700.7 535 72.1
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.6e-199 699.5 744 65.3
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 7.6e-199 698.0 714 64.1
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-197 694.1 514 72.0
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 4.2e-197 692.2 525 72.4
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.9e-194 683.3 527 72.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 7.3e-194 681.4 529 73.2
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.6e-193 680.2 703 61.6
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.6e-191 672.9 485 75.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 7.6e-191 671.4 540 68.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 4.2e-189 665.6 450 76.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 7.1e-189 664.8 513 68.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.6e-188 662.1 510 69.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.6e-188 662.1 450 75.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 6.0e-188 661.8 718 62.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.0e-187 661.0 513 68.0
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 5.1e-187 658.7 527 67.6
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.5e-186 657.1 540 68.0
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.5e-186 656.4 768 60.7
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.4e-186 654.8 518 69.5
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.3e-185 654.1 716 62.3
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.8e-185 652.1 520 67.3
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.1e-184 649.4 727 62.6
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.6e-183 646.4 719 63.3
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 4.5e-183 645.6 724 62.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 7.6e-183 644.8 743 58.4
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.4e-182 641.7 660 66.7
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 9.3e-181 637.9 550 64.7
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.5e-178 629.8 403 79.2
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 3.3e-178 629.4 521 68.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.6e-178 627.9 753 59.6
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 2.1e-177 626.7 710 60.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 3.7e-177 625.9 711 62.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.4e-176 623.2 539 67.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.4e-175 619.4 490 67.8
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 5.8e-175 618.6 726 57.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.2e-174 616.7 721 58.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 8.4e-174 614.8 526 62.7
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.2e-172 610.9 512 64.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.6e-172 610.5 517 65.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 7.9e-172 608.2 519 68.0
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.0e-171 606.3 450 71.3
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 8.7e-171 604.7 725 55.7
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 8.7e-171 604.7 525 66.7
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.3e-170 602.8 520 64.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 5.7e-170 602.1 718 56.4
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 5.7e-170 602.1 490 68.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 7.4e-170 601.7 422 72.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.2e-169 600.1 420 72.9
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.4e-168 597.4 728 56.6
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.0e-167 593.6 445 69.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 8.5e-166 588.2 521 65.3
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.1e-165 587.8 451 67.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-164 583.9 680 57.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.6e-164 582.4 394 75.4
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 6.1e-164 582.0 722 57.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 8.8e-163 578.2 602 60.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.1e-160 569.3 535 61.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 5.3e-160 568.9 592 67.7
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.2e-159 567.8 471 66.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 4.7e-156 555.8 514 60.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 8.8e-155 551.6 437 64.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.0e-154 550.4 728 56.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.0e-154 550.4 726 52.9
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.6e-154 550.1 434 65.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.4e-154 549.3 517 60.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.0e-152 542.0 724 54.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 9.1e-152 541.6 518 61.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 6.5e-150 535.4 467 61.2
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 8.0e-148 528.5 526 56.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.0e-147 528.1 391 68.5
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.8e-145 520.0 451 61.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.3e-145 518.8 528 58.7
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 4.1e-144 516.2 456 61.2
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.2e-143 514.6 719 51.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.7e-142 510.8 466 59.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.7e-135 486.9 405 61.7
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.0e-130 470.7 378 65.1
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.7e-126 457.6 571 60.4
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 7.2e-125 452.2 441 58.3
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.9e-118 430.3 327 65.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 9.5e-109 398.7 490 48.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.6e-108 397.9 350 61.7
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.1e-107 393.7 350 60.3
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.6e-106 390.6 357 58.0
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.4e-104 384.8 420 52.1
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.9e-101 374.4 414 50.5
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.9e-97 360.5 441 49.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.6e-93 346.3 214 80.8
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.1e-92 344.4 488 48.0
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.4e-90 337.0 306 66.0
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.0e-86 325.5 454 61.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-79 302.0 497 42.1
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.0e-78 297.4 370 46.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.6e-76 290.4 401 46.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 5.1e-70 270.0 190 72.6
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 6.7e-70 269.6 210 66.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 5.9e-50 203.4 191 53.9
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.5e-45 188.0 204 52.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.8e-44 183.7 536 29.7
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 7.2e-40 169.9 169 55.0
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 9.4e-40 169.5 192 56.2
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 6.3e-36 156.8 125 64.0
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.8e-35 155.2 125 63.2
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 6.3e-28 130.2 95 66.3
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.4e-27 129.0 397 28.7
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.0e-25 120.6 120 59.2
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.0e-22 110.9 351 50.7
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 4.4e-21 107.5 355 27.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 5.7e-21 107.1 88 61.4
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.8e-20 104.8 331 48.0
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.9e-17 94.7 161 41.6
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.2e-16 90.1 123 43.9
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 2.6e-13 81.6 162 37.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 5.7e-13 80.5 106 44.3
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 7.0e-11 73.6 346 44.5
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.3e-09 69.3 44 70.5
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 5.0e-09 67.4 114 39.5
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.5e-08 65.9 77 48.1
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 3.0e-06 58.2 71 46.5


User provided reference genes

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