Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.9e-196 688.0 346 100.0
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 3.7e-191 671.4 343 97.4
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.7e-191 671.4 342 97.4
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.7e-191 671.4 343 97.4
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.5e-189 664.8 342 96.8
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 4.4e-168 594.7 340 87.9
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 9.9e-168 593.6 340 87.6
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 4.0e-161 571.6 334 85.3
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 8.4e-159 563.9 340 83.5
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.1e-158 563.5 346 82.1
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 4.2e-158 561.6 344 82.0
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.2e-157 560.1 328 85.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.6e-157 559.7 337 82.8
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 2.1e-157 559.3 337 82.8
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 2.1e-157 559.3 330 84.2
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.1e-157 559.3 330 84.5
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 6.0e-157 557.8 323 86.1
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 7.9e-157 557.4 324 84.9
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 3.0e-156 555.4 339 81.7
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 3.0e-156 555.4 331 83.7
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 6.7e-156 554.3 327 84.1
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 1.5e-155 553.1 330 84.2
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.9e-155 552.7 334 82.9
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.3e-155 552.0 336 82.4
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.3e-155 551.6 334 82.3
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 7.4e-155 550.8 343 79.3
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 9.6e-155 550.4 343 81.0
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.7e-154 548.5 330 81.5
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 3.7e-154 548.5 327 83.2
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.7e-154 548.5 344 80.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 6.2e-154 547.7 332 84.0
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.1e-153 547.0 349 78.8
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 3.1e-153 545.4 321 84.1
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 3.1e-153 545.4 325 82.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.3e-153 544.7 321 83.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 5.3e-153 544.7 321 84.1
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 6.9e-153 544.3 336 80.1
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 9.0e-153 543.9 321 83.5
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.2e-152 543.5 334 81.7
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.2e-152 543.5 328 81.7
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 2.6e-152 542.3 335 81.8
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 2.6e-152 542.3 331 82.8
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 7.6e-152 540.8 331 81.0
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 9.9e-152 540.4 323 83.6
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.3e-151 540.0 324 81.8
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.7e-151 539.7 337 80.1
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 2.9e-151 538.9 334 80.8
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 4.9e-151 538.1 334 79.6
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 6.4e-151 537.7 337 79.8
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.9e-150 536.2 364 75.8
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.2e-150 535.0 345 79.1
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.2e-149 533.5 337 78.3
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.2e-149 533.5 336 80.4
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.2e-149 533.5 330 80.9
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 2.1e-149 532.7 344 76.5
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 7.9e-149 530.8 345 77.4
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.0e-148 530.4 331 78.2
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.0e-148 530.4 340 79.7
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.0e-148 530.4 334 80.5
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.3e-148 530.0 324 80.9
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.3e-148 529.3 339 76.7
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.0e-148 528.9 349 77.1
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 6.7e-148 527.7 335 78.2
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.5e-147 526.6 341 75.1
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.5e-147 525.8 344 75.0
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.3e-147 525.0 325 80.6
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 8.2e-146 520.8 338 76.9
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.8e-145 519.6 325 78.5
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 6.9e-145 517.7 319 81.5
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 2.6e-144 515.8 325 77.5
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 2.6e-144 515.8 335 78.5
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.7e-143 513.1 325 78.2
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 8.4e-143 510.8 326 77.3
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-142 510.4 334 76.3
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.1e-142 510.4 341 76.2
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 3.2e-142 508.8 328 77.7
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 4.2e-142 508.4 302 84.8
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.1e-141 506.1 325 77.2
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.5e-141 505.4 330 76.7
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.5e-141 505.4 330 76.7
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 3.5e-141 505.4 334 75.7
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 7.9e-141 504.2 336 76.5
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.8e-140 503.1 330 76.4
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.8e-140 503.1 336 76.2
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.0e-140 502.3 323 76.5
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 5.1e-140 501.5 324 77.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 8.7e-140 500.7 322 77.6
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.1e-139 500.4 333 73.9
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 7.4e-139 497.7 340 75.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 4.1e-137 491.9 305 81.6
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 2.0e-136 489.6 293 82.3
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.0e-136 489.6 344 70.6
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.4e-136 488.8 261 92.0
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 2.9e-135 485.7 331 75.8
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 4.2e-134 481.9 294 81.6
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 3.6e-133 478.8 326 74.2
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.5e-131 473.4 302 78.5
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 9.7e-131 470.7 378 64.6
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.2e-127 459.5 320 75.6
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 6.5e-127 458.0 302 76.2
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.1e-125 453.0 257 86.4
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.7e-125 452.6 257 86.4
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.1e-125 451.4 260 85.0
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 3.9e-124 448.7 350 67.4
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 4.1e-121 438.7 346 67.1
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 6.1e-117 424.9 281 77.6
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.7e-114 416.8 262 79.8
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.0e-111 407.5 227 87.2
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 4.0e-108 395.6 229 85.6
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.7e-106 390.2 329 61.1
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 4.5e-104 382.1 333 58.3
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 3.0e-100 369.4 337 56.1
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.9e-82 309.7 209 77.5
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 6.4e-82 308.5 348 50.3
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.1e-77 293.5 276 61.6
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.1e-76 289.7 211 66.4
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.9e-76 288.1 177 79.7
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.1e-62 244.6 206 61.7
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.4e-60 237.7 142 82.4
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 4.4e-59 232.6 219 59.8
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 5.8e-51 205.7 323 37.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 2.4e-49 200.3 176 60.8
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.3e-47 194.5 330 43.0
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 5.6e-46 189.1 241 44.8
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 2.0e-43 180.6 414 32.6
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 6.7e-39 165.6 114 72.8
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.5e-35 154.5 122 66.4
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 4.5e-35 152.9 232 47.4
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.1e-33 148.3 319 36.1
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 3.7e-21 106.7 250 34.4
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 2.6e-19 100.5 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 7.2e-17 92.4 98 52.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.4e-15 88.2 45 91.1
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.1e-12 77.0 55 70.9
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 5.9e-11 72.8 78 51.3
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 4.7e-08 63.2 30 86.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 5.1e-07 59.7 41 78.0


User provided reference genes

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