Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 5.4e-148 527.7 278 100.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.6e-121 438.0 285 81.4
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.3e-119 432.6 284 80.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-118 430.3 284 80.3
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.7e-117 426.4 283 79.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.0e-114 415.6 283 75.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.3e-85 320.5 295 58.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.9e-81 306.6 282 55.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.0e-79 298.9 260 58.5
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.9e-79 298.1 280 53.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.2e-78 297.4 289 56.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.8e-77 292.4 288 52.8
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-74 283.1 257 54.9
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.0e-74 282.7 285 51.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 5.1e-74 282.0 287 52.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.3e-73 279.3 295 51.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.3e-73 278.9 256 54.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 5.7e-73 278.5 281 52.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.2e-72 276.6 299 52.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.8e-72 275.4 287 50.9
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 8.2e-72 274.6 288 50.0
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.1e-71 274.2 291 50.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.4e-71 273.9 254 54.7
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.4e-71 273.9 306 49.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.1e-71 272.7 289 49.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.1e-71 272.7 291 50.2
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.9e-71 271.6 256 52.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.9e-71 271.6 282 52.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.2e-70 270.8 281 52.0
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.2e-70 270.8 256 52.7
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-70 270.8 289 48.4
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.5e-70 268.9 279 51.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 5.9e-70 268.5 279 51.3
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.9e-69 266.2 291 47.8
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.8e-69 265.8 261 53.3
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 5.0e-69 265.4 261 53.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.5e-69 265.0 279 50.5
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 8.5e-69 264.6 292 46.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-68 264.2 279 50.5
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.9e-68 263.5 287 49.1
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 9.4e-68 261.2 291 52.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.4e-68 261.2 255 53.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 9.4e-68 261.2 255 53.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 9.4e-68 261.2 279 50.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.2e-67 260.8 281 48.0
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.2e-67 260.8 279 49.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.6e-67 260.4 287 49.8
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.9e-67 258.1 290 48.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 7.9e-67 258.1 256 52.3
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.0e-66 257.7 286 49.0
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.4e-66 257.3 250 52.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.0e-66 256.1 295 47.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.9e-66 255.8 261 51.0
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.1e-66 255.4 290 49.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 6.7e-66 255.0 307 45.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.1e-65 254.2 257 52.1
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.0e-65 253.4 278 48.9
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.5e-65 253.1 285 48.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.3e-65 252.3 254 50.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.7e-65 251.9 262 52.7
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.4e-65 251.5 282 48.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.7e-65 251.1 256 50.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.2e-64 250.0 254 51.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 4.8e-64 248.8 281 47.7
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 8.2e-64 248.1 306 46.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.1e-63 247.7 261 47.9
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.8e-63 246.9 260 46.9
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.1e-63 245.7 254 48.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 5.3e-63 245.4 259 51.4
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.5e-62 243.8 272 48.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.6e-62 243.0 255 52.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.5e-62 242.3 296 46.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 5.9e-62 241.9 254 48.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 7.7e-62 241.5 281 45.9
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-61 240.7 256 48.0
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.3e-61 240.7 297 43.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.7e-61 240.4 272 43.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.2e-61 240.0 263 49.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.2e-61 240.0 249 50.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.9e-61 239.6 253 47.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.8e-61 239.2 267 47.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.5e-61 238.4 232 53.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.4e-60 237.3 279 47.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.5e-60 236.5 255 49.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 7.2e-60 235.0 289 46.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 9.4e-60 234.6 291 45.4
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.1e-59 233.4 256 48.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.1e-59 233.4 292 46.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.7e-59 233.0 285 46.0
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 6.1e-59 231.9 291 45.4
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.9e-59 231.5 248 47.6
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.8e-58 230.3 288 44.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.3e-58 229.9 184 62.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.9e-58 229.2 256 46.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.1e-58 228.8 253 48.2
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.0e-57 226.9 261 45.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.0e-57 226.9 261 45.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.7e-57 225.3 261 44.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.4e-55 219.9 283 45.2
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 4.5e-54 215.7 210 50.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.5e-54 215.7 254 44.1
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.7e-54 214.9 346 37.6
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.3e-53 214.2 254 43.7
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.7e-53 213.8 300 41.7
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.1e-52 211.1 261 45.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.1e-52 211.1 303 39.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 7.2e-52 208.4 288 41.3
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.2e-52 208.4 281 40.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.1e-51 206.8 390 33.6
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-49 201.1 253 44.7
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.4e-47 194.1 169 56.8
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 4.5e-46 189.1 186 51.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.9e-45 186.4 169 55.6
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 6.5e-45 185.3 210 47.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.5e-44 183.3 180 52.2
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 3.0e-42 176.4 219 42.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.7e-40 169.5 134 61.9
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.1e-39 167.9 254 40.6
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.0e-37 159.1 280 34.3
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.5e-37 158.3 248 37.9
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.2e-33 147.9 279 36.2
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.8e-32 143.3 253 36.0
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.7e-30 135.2 184 42.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.9e-28 130.6 241 32.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.3e-28 129.8 127 52.0
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.5e-28 129.0 185 38.9
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 7.2e-28 128.6 106 58.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.1e-27 125.6 153 39.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-25 120.9 152 42.1
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 7.5e-25 118.6 242 30.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.7e-24 117.5 163 40.5
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.2e-24 117.1 157 39.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 3.7e-24 116.3 281 30.6
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-22 110.2 194 37.1
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.9e-22 109.0 169 40.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.3e-21 107.1 128 40.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 3.9e-21 106.3 178 35.4
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.9e-21 106.3 422 25.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.5e-20 103.6 88 56.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.1e-19 100.5 135 40.7
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.9e-18 95.1 243 32.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.6e-17 93.6 101 53.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 5.8e-17 92.4 144 37.5
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 7.5e-17 92.0 133 39.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.5e-14 83.2 258 28.3
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.0e-14 82.4 236 28.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.9e-13 79.7 109 42.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.3e-12 76.6 67 56.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-11 74.3 66 57.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.1e-11 73.9 68 52.9
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.8e-11 73.6 144 32.6
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.8e-11 73.6 144 32.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.0e-10 69.7 119 42.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.0e-09 67.4 99 41.4
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.7e-08 64.3 63 50.8
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 3.2e-07 60.1 128 32.8
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 7.1e-07 58.9 31 80.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 4.6e-06 56.2 122 29.5
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 6.0e-06 55.8 140 28.6


User provided reference genes

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