Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 1.6e-161 572.8 305 100.0
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 9.4e-146 520.4 306 90.5
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 2.3e-144 515.8 306 89.9
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 7.0e-133 477.6 314 81.5
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.7e-132 475.7 314 81.5
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 6.5e-131 471.1 313 80.5
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 2.6e-127 459.1 310 79.0
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 2.4e-109 399.4 313 70.3
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 9.2e-109 397.5 304 69.7
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 2.7e-108 396.0 317 67.8
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 5.9e-108 394.8 310 67.7
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.7e-107 393.3 312 67.3
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 2.3e-107 392.9 318 67.6
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 1.5e-106 390.2 318 67.3
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.5e-106 390.2 311 68.5
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 4.7e-105 385.2 308 66.9
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.4e-104 383.6 308 65.9
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.8e-104 383.3 313 67.7
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 2.3e-104 382.9 314 68.8
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 8.9e-104 380.9 309 67.3
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 2.0e-103 379.8 288 71.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 5.8e-103 378.3 285 71.9
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 2.2e-102 376.3 312 66.0
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 3.7e-102 375.6 311 66.9
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 4.9e-102 375.2 318 65.4
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 6.4e-102 374.8 306 67.6
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 8.3e-102 374.4 308 66.9
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 4.1e-101 372.1 312 62.5
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 7.0e-101 371.3 314 64.3
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.6e-100 370.2 311 63.0
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 2.0e-100 369.8 312 65.4
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 4.6e-100 368.6 309 66.3
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 7.8e-100 367.9 309 66.7
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 1.0e-99 367.5 309 64.4
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.3e-99 367.1 302 67.2
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 3.9e-99 365.5 299 66.6
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 8.6e-99 364.4 310 65.5
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 1.1e-98 364.0 286 69.6
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.1e-98 364.0 308 64.0
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 2.5e-98 362.8 311 61.4
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 3.3e-98 362.5 314 62.4
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 7.3e-98 361.3 309 64.1
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 9.5e-98 360.9 309 65.4
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.6e-97 360.1 309 63.4
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.1e-97 359.8 307 64.8
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.1e-96 357.5 308 63.3
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.1e-96 357.5 308 63.0
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.4e-96 357.1 311 64.6
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.8e-96 356.7 310 64.8
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 2.3e-96 356.3 309 63.4
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 2.0e-95 353.2 283 69.3
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 3.4e-95 352.4 304 65.5
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 4.4e-95 352.1 306 62.1
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 9.8e-95 350.9 282 66.3
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 3.7e-94 349.0 315 62.9
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.7e-94 349.0 282 66.0
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 6.4e-94 348.2 315 61.9
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.0e-91 340.9 309 59.2
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 1.7e-91 340.1 311 60.1
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 8.6e-91 337.8 311 60.1
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 5.6e-90 335.1 309 57.3
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 7.3e-90 334.7 309 57.0
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 2.8e-89 332.8 308 57.8
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.1e-88 330.9 309 57.3
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 5.2e-88 328.6 309 57.0
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 5.2e-88 328.6 309 57.0
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 6.8e-88 328.2 316 60.1
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 1.2e-87 327.4 308 57.5
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 3.4e-87 325.9 315 56.2
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 2.9e-86 322.8 312 55.8
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 4.9e-86 322.0 312 56.1
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 6.4e-86 321.6 311 55.3
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 8.4e-86 321.2 310 56.1
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-85 320.5 303 56.1
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 4.1e-85 318.9 315 57.1
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 5.4e-85 318.5 312 56.4
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 7.1e-85 318.2 312 56.1
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 2.3e-83 313.2 309 55.3
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 5.1e-83 312.0 309 57.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 5.1e-83 312.0 308 55.8
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 1.5e-82 310.5 312 54.5
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 1.6e-81 307.0 308 57.8
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 1.1e-80 304.3 307 55.7
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 6.9e-80 301.6 291 57.4
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.5e-79 300.4 315 52.1
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 2.1e-76 290.0 307 56.0
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 3.5e-76 289.3 313 53.0
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.5e-74 283.9 307 53.1
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 4.3e-74 282.3 312 52.2
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.6e-73 280.4 309 52.1
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 8.1e-73 278.1 313 51.8
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 6.7e-67 258.5 279 53.8
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.1e-61 241.1 174 73.6
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.6e-55 219.9 308 45.5
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.9e-50 203.8 222 54.5
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 6.9e-48 195.3 169 60.4
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 1.3e-46 191.0 326 41.4
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 8.5e-46 188.3 293 39.9
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 2.1e-44 183.7 164 63.4
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 2.6e-39 166.8 301 36.9
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 1.4e-37 161.0 295 36.6
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 7.2e-37 158.7 124 65.3
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.0e-34 150.6 307 32.6
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.2e-31 141.4 301 34.2
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 1.2e-31 141.4 186 47.8
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 4.5e-23 112.8 128 51.6
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.5e-22 108.6 193 34.7
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.2e-21 106.7 280 30.0
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 4.8e-17 92.8 282 28.0
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 8.2e-17 92.0 69 69.6
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 9.1e-16 88.6 186 32.3
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 9.1e-16 88.6 221 29.4
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 1.2e-15 88.2 202 35.6
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 4.5e-15 86.3 284 28.2
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 2.9e-14 83.6 269 28.3
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 3.8e-14 83.2 268 26.5
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 6.5e-14 82.4 259 27.0
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.5e-13 81.3 303 26.4
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.5e-13 81.3 269 27.5
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.9e-13 80.9 277 27.8
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 5.5e-13 79.3 283 25.1
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 7.2e-13 79.0 271 27.3
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 9.4e-13 78.6 279 26.5
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 9.4e-13 78.6 283 26.1
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 9.4e-13 78.6 269 25.7
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 2.1e-12 77.4 279 24.4
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.6e-12 76.6 284 26.8
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 3.6e-12 76.6 184 29.9
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 4.7e-12 76.3 124 31.5
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 4.7e-12 76.3 279 25.4
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 6.1e-12 75.9 279 25.1
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.0e-11 75.1 279 25.1
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.4e-11 74.7 264 25.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 1.4e-11 74.7 284 26.8
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.8e-11 74.3 99 43.4
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.8e-11 74.3 284 26.4
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 1.8e-11 74.3 278 27.0
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 2.3e-11 73.9 279 23.7
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 3.0e-11 73.6 281 25.3
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 4.0e-11 73.2 280 24.6
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 6.8e-11 72.4 266 24.1
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 6.8e-11 72.4 280 26.1
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 6.8e-11 72.4 205 30.7
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 6.8e-11 72.4 279 24.7
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 8.8e-11 72.0 275 26.2
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 2.0e-10 70.9 264 24.2
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 2.0e-10 70.9 281 22.8
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 2.6e-10 70.5 264 23.9
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 3.4e-10 70.1 280 25.7
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 3.4e-10 70.1 279 24.4
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 3.4e-10 70.1 138 33.3
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 5.7e-10 69.3 281 24.2
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 5.7e-10 69.3 263 26.6
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 7.5e-10 68.9 285 25.6
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 1.3e-09 68.2 267 24.0
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.7e-09 67.8 241 26.1
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 2.8e-09 67.0 157 29.9
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 1.4e-08 64.7 102 34.3
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 1.4e-08 64.7 239 27.6
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.8e-08 64.3 280 25.0
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.4e-08 63.9 188 27.1
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 3.1e-08 63.5 271 22.9
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.1e-08 63.5 277 24.5
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 3.1e-08 63.5 114 30.7
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 4.1e-08 63.2 284 21.1
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 5.4e-08 62.8 277 24.5
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.4e-08 62.8 111 32.4
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.4e-08 62.8 111 32.4
Aa31LG2G13870 Aethionema arabicum HOM05D001193 ORTHO05D001016 7.0e-08 62.4 274 26.6
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 9.1e-08 62.0 274 22.6
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.2e-07 61.6 282 21.3
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.2e-07 61.6 271 23.2
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 1.6e-07 61.2 192 24.0
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.6e-07 61.2 247 25.9
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 2.0e-07 60.8 294 22.8
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 2.7e-07 60.5 284 22.5
AUR62011399 Chenopodium quinoa HOM05D001193 ORTHO05D001016 1.3e-06 58.2 299 26.1
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.3e-06 58.2 192 25.0
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 1.7e-06 57.8 166 30.7
Sabra01G0102400 Salix brachista HOM05D001193 ORTHO05D001016 3.8e-06 56.6 285 23.2
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 5.0e-06 56.2 282 21.6
AagrBONN_evm.TU.Sc2ySwM_117.445 Anthoceros agrestis HOM05D001193 ORTHO05D001016 6.5e-06 55.8 277 23.1


User provided reference genes

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