Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 1.1e-62 243.0 117 100.0
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 5.0e-39 164.5 111 72.1
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.5e-38 162.9 111 71.2
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 2.5e-38 162.2 111 71.2
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 2.5e-38 162.2 111 71.2
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.3e-38 161.8 111 70.3
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 4.7e-37 157.9 111 68.5
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 1.4e-36 156.4 103 71.8
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 4.4e-35 151.4 103 68.9
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 7.5e-35 150.6 103 69.9
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 9.8e-35 150.2 103 68.9
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 2.8e-34 148.7 103 68.9
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 2.8e-34 148.7 108 65.7
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 1.1e-33 146.7 103 68.0
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 1.4e-33 146.4 103 68.0
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 1.4e-33 146.4 103 66.0
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 2.4e-33 145.6 103 66.0
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 2.4e-33 145.6 103 67.0
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 2.4e-33 145.6 103 67.0
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 2.4e-33 145.6 111 61.3
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.1e-33 145.2 103 66.0
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 5.4e-33 144.4 103 66.0
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 7.0e-33 144.1 108 63.9
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 2.7e-32 142.1 103 66.0
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 3.5e-32 141.7 111 59.5
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 7.8e-32 140.6 103 64.1
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 1.0e-31 140.2 103 64.1
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 1.0e-31 140.2 103 64.1
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 1.0e-31 140.2 103 65.0
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.9e-31 138.7 103 63.1
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.9e-31 138.7 103 64.1
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 2.9e-31 138.7 103 62.1
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.9e-31 138.7 111 58.6
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.8e-31 138.3 103 63.1
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 3.8e-31 138.3 103 64.1
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 3.8e-31 138.3 103 62.1
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 5.0e-31 137.9 111 57.7
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 5.0e-31 137.9 111 57.7
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 5.0e-31 137.9 108 61.1
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 8.6e-31 137.1 103 63.1
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 8.6e-31 137.1 103 63.1
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 8.6e-31 137.1 103 62.1
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 1.1e-30 136.7 103 62.1
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 1.5e-30 136.3 111 58.6
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.5e-30 136.3 103 62.1
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 1.5e-30 136.3 103 62.1
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 1.5e-30 136.3 103 63.1
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.9e-30 136.0 103 58.3
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.9e-30 136.0 103 59.2
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 2.5e-30 135.6 103 61.2
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 2.5e-30 135.6 103 63.1
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 3.3e-30 135.2 103 59.2
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 3.3e-30 135.2 103 59.2
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 3.3e-30 135.2 108 61.1
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 3.3e-30 135.2 103 63.1
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 4.3e-30 134.8 103 61.2
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 5.6e-30 134.4 111 56.8
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 7.3e-30 134.0 103 59.2
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 7.3e-30 134.0 103 58.3
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 7.3e-30 134.0 103 61.2
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 7.3e-30 134.0 103 61.2
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 9.5e-30 133.7 103 59.2
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 9.5e-30 133.7 103 58.3
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 9.5e-30 133.7 103 58.3
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 9.5e-30 133.7 103 58.3
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 9.5e-30 133.7 111 55.9
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.2e-29 133.3 111 55.0
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.2e-29 133.3 103 62.1
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 1.6e-29 132.9 103 62.1
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 1.6e-29 132.9 111 56.8
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 2.1e-29 132.5 103 57.3
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 2.1e-29 132.5 111 57.7
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 2.1e-29 132.5 103 61.2
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 2.1e-29 132.5 103 61.2
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.8e-29 132.1 103 59.2
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.8e-29 132.1 103 60.2
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 4.7e-29 131.3 103 60.2
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 4.7e-29 131.3 103 60.2
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 4.7e-29 131.3 104 60.6
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 6.1e-29 131.0 103 59.2
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 8.0e-29 130.6 103 61.2
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 8.0e-29 130.6 104 59.6
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.0e-28 130.2 103 57.3
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.0e-28 130.2 103 59.2
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 1.4e-28 129.8 103 60.2
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.4e-28 129.8 111 55.0
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.8e-28 129.4 103 59.2
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 56.3
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 56.3
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 56.3
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 56.3
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 59.2
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 59.2
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 2.3e-28 129.0 103 59.2
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 4.0e-28 128.3 103 55.3
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 4.0e-28 128.3 103 58.3
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 6.8e-28 127.5 103 59.2
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 8.9e-28 127.1 103 60.2
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 8.9e-28 127.1 108 59.3
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 8.9e-28 127.1 111 55.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 8.9e-28 127.1 104 58.7
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 1.2e-27 126.7 103 57.3
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-27 126.7 103 60.2
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.2e-27 126.7 103 59.2
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.5e-27 126.3 103 59.2
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 2.0e-27 125.9 111 55.0
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 2.6e-27 125.6 103 55.3
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 2.6e-27 125.6 103 55.3
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 2.6e-27 125.6 103 57.3
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 4.4e-27 124.8 100 56.0
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 4.4e-27 124.8 103 53.4
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 5.8e-27 124.4 103 58.3
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 7.5e-27 124.0 102 54.9
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.3e-26 123.2 111 54.1
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 1.3e-26 123.2 111 54.1
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 1.7e-26 122.9 103 55.3
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 1.4e-25 119.8 103 54.4
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 1.4e-25 119.8 103 52.4
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.9e-25 119.4 103 52.4
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.9e-25 119.4 103 57.3
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 2.4e-25 119.0 103 53.4
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 7.0e-25 117.5 104 54.8
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 2.7e-24 115.5 106 51.9
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 3.5e-24 115.2 111 46.8
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 7.8e-24 114.0 103 51.5
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 6.6e-23 110.9 103 50.5
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.1e-22 110.2 103 53.4
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 6.8e-20 100.9 111 43.2
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 8.3e-18 94.0 118 41.5
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 5.4e-17 91.3 79 51.9
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 5.4e-17 91.3 86 52.3
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 6.6e-15 84.3 81 49.4
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 9.5e-14 80.5 85 48.2
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.8e-13 79.0 58 62.1
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 4.7e-13 78.2 111 35.1
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.0e-12 75.1 101 39.6
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 5.2e-12 74.7 56 60.7
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 6.8e-12 74.3 105 38.1
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 6.8e-12 74.3 105 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 1.2e-11 73.6 104 34.6
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.5e-11 73.2 70 52.9
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.1e-09 67.0 46 63.0
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.1e-09 67.0 46 63.0


User provided reference genes

Program Settings