Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.6e-20 100.5 47 100.0
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 3.3e-18 94.0 43 97.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.3e-17 92.0 43 95.3
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.3e-17 92.0 43 93.0
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.2e-17 91.3 43 93.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.8e-17 90.9 43 93.0
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.8e-17 90.9 43 90.7
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.8e-17 90.9 43 90.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.8e-17 90.9 43 93.0
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.8e-17 90.9 43 90.7
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 3.7e-17 90.5 43 93.0
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 88.4
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 90.7
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 88.4
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 90.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 93.0
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 90.7
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 8.2e-17 89.4 43 93.0
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.1e-16 89.0 43 93.0
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.1e-16 89.0 43 93.0
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.1e-16 89.0 43 90.7
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.8e-16 88.2 43 86.0
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.8e-16 88.2 43 90.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.8e-16 88.2 43 88.4
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.8e-16 88.2 43 88.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.4e-16 87.8 43 88.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 2.4e-16 87.8 43 90.7
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.4e-16 87.8 43 88.4
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.4e-16 87.8 43 88.4
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.4e-16 87.8 43 88.4
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.1e-16 87.4 43 86.0
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.1e-16 87.4 43 88.4
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.1e-16 87.4 43 90.7
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 4.1e-16 87.0 43 86.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 4.1e-16 87.0 43 88.4
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 83.7
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 83.7
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 86.0
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 86.0
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 86.0
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 88.4
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 86.0
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.3e-16 86.7 43 86.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 88.4
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 86.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 88.4
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 88.4
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 88.4
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 88.4
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 86.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 86.0
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 7.0e-16 86.3 43 86.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 9.1e-16 85.9 43 86.0
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 9.1e-16 85.9 43 88.4
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 9.1e-16 85.9 43 86.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 88.4
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 88.4
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 86.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 88.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 86.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 81.4
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.2e-15 85.5 43 86.0
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 86.0
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 86.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 86.0
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 83.7
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.6e-15 85.1 43 86.0
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 83.7
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 81.4
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 83.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 81.4
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 81.4
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.0e-15 84.7 43 86.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 2.6e-15 84.3 43 81.4
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 3.5e-15 84.0 47 83.0
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 86.0
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 86.0
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 86.0
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 79.1
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 86.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 86.0
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.5e-15 83.6 43 79.1
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 5.9e-15 83.2 43 83.7
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.9e-15 83.2 43 83.7
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 5.9e-15 83.2 43 81.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 5.9e-15 83.2 43 79.1
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 7.7e-15 82.8 42 83.3
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 7.7e-15 82.8 43 88.4
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 7.7e-15 82.8 43 83.7
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.0e-14 82.4 43 81.4
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.0e-14 82.4 43 81.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.3e-14 82.0 43 83.7
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.7e-14 81.6 43 79.1
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 1.7e-14 81.6 43 83.7
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.7e-14 81.6 43 81.4
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.9e-14 80.9 43 81.4
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.5e-13 78.6 43 79.1
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.5e-13 76.6 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.6e-12 75.1 44 72.7
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.6e-12 75.1 61 62.3
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.0e-12 72.8 43 74.4
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 3.0e-11 70.9 43 67.4
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-09 65.5 41 70.7
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.7e-09 65.1 29 96.6
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-09 64.7 43 65.1
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 2.4e-08 61.2 29 93.1
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 7.0e-08 59.7 43 67.4
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.2e-07 58.9 25 96.0
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.5e-07 57.4 46 63.0
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.0e-06 55.8 30 73.3
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.7e-06 55.1 27 85.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 8.5e-06 52.8 27 85.2


User provided reference genes

Program Settings