Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.4e-40 169.1 81 100.0
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 4.4e-34 147.5 72 97.2
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 4.1e-24 114.4 162 43.2
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 2.7e-23 111.7 164 42.1
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.6e-23 110.9 162 41.4
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.9e-23 110.5 162 40.7
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.3e-22 109.4 162 40.7
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-22 109.4 162 40.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.3e-22 109.4 164 41.5
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 4.3e-21 104.4 164 39.6
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 7.3e-21 103.6 163 39.3
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 9.5e-21 103.2 148 40.5
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.2e-20 102.8 147 40.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.6e-20 102.4 163 37.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 2.1e-20 102.1 163 38.0
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.8e-20 101.7 78 66.7
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.4e-19 99.4 163 38.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.4e-19 99.4 163 36.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.3e-19 98.6 163 38.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 3.1e-19 98.2 163 36.8
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.0e-19 97.8 163 36.8
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.0e-19 97.8 163 36.8
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 5.2e-19 97.4 163 37.4
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.2e-19 97.4 163 38.0
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 6.8e-19 97.1 163 36.8
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 8.9e-19 96.7 163 37.4
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.2e-18 96.3 163 36.2
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.5e-18 95.9 173 35.8
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-18 95.9 163 36.2
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.5e-18 95.9 163 37.4
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-18 95.5 163 36.2
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.0e-18 95.5 163 35.0
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.0e-18 95.5 163 36.2
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.6e-18 95.1 163 38.0
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.6e-18 95.1 163 37.4
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.6e-18 95.1 163 37.4
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.6e-18 95.1 163 37.4
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 4.4e-18 94.4 163 35.6
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 5.8e-18 94.0 162 35.2
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.8e-18 94.0 163 37.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 9.8e-18 93.2 163 36.2
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.7e-17 92.4 163 36.2
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-17 92.0 146 39.0
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.2e-17 92.0 163 36.8
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.2e-17 92.0 163 35.6
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.9e-17 91.7 163 35.0
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 3.7e-17 91.3 45 88.9
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 3.7e-17 91.3 163 35.0
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.9e-17 90.9 160 36.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 6.4e-17 90.5 162 35.2
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 6.4e-17 90.5 163 35.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 6.4e-17 90.5 163 35.6
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.3e-17 90.1 162 34.6
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 8.3e-17 90.1 163 35.6
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.1e-16 89.7 163 34.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.1e-16 89.7 162 34.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.4e-16 89.4 163 35.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.4e-16 89.4 163 35.6
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.4e-16 89.4 163 34.4
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.4e-16 89.4 44 88.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.9e-16 89.0 148 37.8
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.9e-16 89.0 49 85.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 3.2e-16 88.2 46 84.8
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.2e-16 88.2 163 34.4
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.2e-16 88.2 45 86.7
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 3.2e-16 88.2 163 35.0
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 4.1e-16 87.8 45 82.2
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 5.4e-16 87.4 61 70.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 7.0e-16 87.0 163 35.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 9.2e-16 86.7 163 34.4
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 9.2e-16 86.7 163 36.2
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 9.2e-16 86.7 163 33.7
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 9.2e-16 86.7 162 33.3
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.6e-15 85.9 45 84.4
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.6e-15 85.9 45 82.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.6e-15 85.9 45 82.2
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.6e-15 85.9 163 34.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.6e-15 85.9 163 35.6
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 2.0e-15 85.5 45 84.4
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 3.5e-15 84.7 45 84.4
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 7.8e-15 83.6 163 31.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 7.8e-15 83.6 163 34.4
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 7.8e-15 83.6 163 32.5
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.0e-14 83.2 47 78.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.0e-14 83.2 45 80.0
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.0e-14 83.2 163 32.5
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.0e-14 83.2 47 78.7
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.3e-14 82.8 46 80.4
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.7e-14 82.4 163 33.1
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.7e-14 82.4 47 80.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.7e-14 82.4 163 31.9
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.7e-14 82.4 45 80.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 3.0e-14 81.6 45 82.2
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.0e-14 81.6 163 33.7
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 3.0e-14 81.6 45 77.8
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 3.9e-14 81.3 172 32.0
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.9e-14 81.3 163 32.5
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.0e-14 80.9 164 31.1
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.0e-14 80.9 164 31.1
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 8.6e-14 80.1 163 31.9
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.1e-13 79.7 164 31.1
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 4.3e-13 77.8 153 34.0
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 4.3e-13 77.8 45 80.0
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.3e-13 77.8 45 80.0
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 4.3e-13 77.8 44 77.3
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 5.6e-13 77.4 47 74.5
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 5.6e-13 77.4 45 75.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 7.3e-13 77.0 47 70.2
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 7.3e-13 77.0 47 70.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 7.3e-13 77.0 47 70.2
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.2e-12 76.3 37 86.5
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-12 75.9 47 68.1
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-12 75.9 47 66.0
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.6e-12 75.9 47 68.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.6e-12 75.9 47 70.2
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.6e-12 75.9 45 71.1
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 2.1e-12 75.5 45 77.8
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.1e-12 75.5 47 68.1
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.8e-12 75.1 47 63.8
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-12 75.1 47 66.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 2.8e-12 75.1 47 63.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.8e-12 75.1 47 66.0
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 2.8e-12 75.1 45 77.8
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 3.6e-12 74.7 47 68.1
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.6e-12 74.7 47 72.3
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 8.1e-12 73.6 47 66.0
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.4e-11 72.8 35 94.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 8.9e-11 70.1 47 66.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.3e-09 66.2 162 27.8
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.1e-08 63.2 43 65.1
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.4e-08 62.8 46 67.4
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.9e-08 62.4 162 27.8
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 7.1e-08 60.5 45 60.0
CDE07G1693 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 2.1e-07 58.9 69 46.4
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.6e-07 57.8 49 55.1
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.3e-06 55.5 167 29.3
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.3e-06 55.5 32 75.0


User provided reference genes

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