Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0127341 Rosa chinensis HOM05D005106 ORTHO05D006224 4.0e-38 161.0 84 100.0
FAN09G4502 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.5e-24 115.9 83 79.5
FAN02G3272 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.2e-23 112.8 85 77.6
FAN05G0301 Fragaria x ananassa HOM05D005106 ORTHO05D006224 2.8e-23 111.7 85 77.6
Potri.007G137400 Populus trichocarpa HOM05D005106 ORTHO05D006224 8.3e-20 100.1 85 67.1
Carub.0008s0432 Capsella rubella HOM05D005106 ORTHO05D006224 3.5e-18 94.7 82 67.1
Gorai.005G199600 Gossypium raimondii HOM05D005106 ORTHO05D006224 7.8e-18 93.6 83 65.1
Eucgr.K01050 Eucalyptus grandis HOM05D005106 ORTHO05D006224 3.9e-17 91.3 81 64.2
CANSAT64G0803 Cannabis sativa HOM05D005106 ORTHO05D006224 1.9e-16 89.0 82 68.3
MSTRG.25482 Avicennia marina HOM05D005106 ORTHO05D006224 4.3e-16 87.8 82 63.4
Thecc.02G185300 Theobroma cacao HOM05D005106 ORTHO05D006224 4.3e-16 87.8 82 62.2
Nitab4.5_0002677g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 7.3e-16 87.0 82 59.8
Nn1g06427 Nelumbo nucifera HOM05D005106 ORTHO05D006224 9.5e-16 86.7 82 62.2
Gohir.D02G177800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 2.8e-15 85.1 79 62.0
Actinidia06452 Actinidia chinensis HOM05D005106 ORTHO05D006224 4.7e-15 84.3 80 62.5
Duzib132G0108 Durio zibethinus HOM05D005106 ORTHO05D006224 4.7e-15 84.3 79 62.0
Lj3g0003979 Lotus japonicus HOM05D005106 ORTHO05D006224 4.7e-15 84.3 77 63.6
Medtr2g090655 Medicago truncatula HOM05D005106 ORTHO05D006224 1.8e-14 82.4 86 62.8
Dinv21367 Davidia involucrata HOM05D005106 ORTHO05D006224 1.2e-13 79.7 80 60.0
AUR62010400 Chenopodium quinoa HOM05D005106 ORTHO05D006224 3.4e-13 78.2 81 59.3
Actinidia22276 Actinidia chinensis HOM05D005106 ORTHO05D006224 4.4e-13 77.8 80 60.0
FvH4_6g26630 Fragaria vesca HOM05D005106 ORTHO05D006224 7.6e-13 77.0 82 61.0
AUR62016818 Chenopodium quinoa HOM05D005106 ORTHO05D006224 1.3e-12 76.3 82 58.5
PSO675G4288 Papaver somniferum HOM05D005106 ORTHO05D006224 1.7e-12 75.9 91 57.1
vmacro09001 Vaccinium macrocarpon HOM05D005106 ORTHO05D006224 8.4e-12 73.6 91 52.7
Cc10_g09480 Coffea canephora HOM05D005106 ORTHO05D006224 1.4e-11 72.8 80 56.2
CiPaw.03G180900 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.9e-11 72.4 80 58.8
Gohir.A03G154800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 1.9e-11 72.4 79 55.7
unitig_37.g13100 Utricularia gibba HOM05D005106 ORTHO05D006224 3.2e-11 71.6 76 59.2
Duzib132G0012 Durio zibethinus HOM05D005106 ORTHO05D006224 4.1e-11 71.2 67 61.2
Sc04g0004790 Simmondsia chinensis HOM05D005106 ORTHO05D006224 4.1e-11 71.2 87 59.8
Sc21g0003220 Simmondsia chinensis HOM05D005106 ORTHO05D006224 7.1e-11 70.5 93 55.9
FAN14G3298 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.2e-10 69.7 76 61.8
ClCG02G009520 Citrullus lanatus HOM05D005106 ORTHO05D006224 2.7e-10 68.6 85 55.3
Thhalv10003260m.g Eutrema salsugineum HOM05D005106 ORTHO05D006224 3.5e-10 68.2 82 57.3
CSS0035973 Camellia sinensis var. sinensis HOM05D005106 ORTHO05D006224 1.7e-09 65.9 80 55.0
Ciclev10016365m.g Citrus clementina HOM05D005106 ORTHO05D006224 1.7e-09 65.9 79 51.9
HanXRQChr14g0454161 Helianthus annuus HOM05D005106 ORTHO05D006224 1.7e-09 65.9 82 53.7
Cpa.g.sc83.88 Carica papaya HOM05D005106 ORTHO05D006224 8.7e-09 63.5 83 53.0
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 8.7e-09 63.5 86 53.5
PSO541G1716 Papaver somniferum HOM05D005106 ORTHO05D006224 8.7e-09 63.5 89 52.8
Hund09671 Selenicereus undatus HOM05D005106 ORTHO05D006224 1.5e-08 62.8 85 54.1
Sed0010388 Sechium edule HOM05D005106 ORTHO05D006224 1.9e-08 62.4 80 52.5
CiPaw.04G128700 Carya illinoinensis HOM05D005106 ORTHO05D006224 2.5e-08 62.0 58 63.8
Migut.C01328 Erythranthe guttata HOM05D005106 ORTHO05D006224 2.5e-08 62.0 77 53.2
CsaV3_4G010150 Cucumis sativus L. HOM05D005106 ORTHO05D006224 4.3e-08 61.2 79 50.6
MELO3C026304.2 Cucumis melo HOM05D005106 ORTHO05D006224 5.6e-08 60.8 78 52.6
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 7.3e-08 60.5 80 55.0
BcaB07g30541 Brassica carinata HOM05D005106 ORTHO05D006224 9.6e-08 60.1 78 56.4
Potri.017G014600 Populus trichocarpa HOM05D005106 ORTHO05D006224 9.6e-08 60.1 83 51.8
Duzib052G0667 Durio zibethinus HOM05D005106 ORTHO05D006224 1.6e-07 59.3 79 53.2
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 3.6e-07 58.2 84 48.8
GSVIVG01020600001 Vitis vinifera HOM05D005106 ORTHO05D006224 4.7e-07 57.8 82 50.0
ATR0665G079 Amborella trichopoda HOM05D005106 ORTHO05D006224 1.1e-06 56.6 72 56.9
MD17G1234600 Malus domestica HOM05D005106 ORTHO05D006224 1.1e-06 56.6 79 48.1
Glyma.12G206400 Glycine max HOM05D005106 ORTHO05D006224 2.4e-06 55.5 80 48.8
CAN.G53.9 Capsicum annuum HOM05D005106 ORTHO05D006224 3.1e-06 55.1 79 49.4
EL10As7g23802 Beta vulgaris HOM05D005106 ORTHO05D006224 4.0e-06 54.7 80 50.0
Nitab4.5_0000061g0200 Nicotiana tabacum HOM05D005106 ORTHO05D006224 4.0e-06 54.7 82 46.3
Sopen02g013640 Solanum pennellii HOM05D005106 ORTHO05D006224 4.0e-06 54.7 84 50.0
TAR627G0282 Trochodendron aralioides HOM05D005106 ORTHO05D006224 9.0e-06 53.5 52 65.4


User provided reference genes

Program Settings