Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 5.2e-67 257.7 140 100.0
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.2e-41 172.6 139 66.9
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 5.4e-40 167.9 133 57.1
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.7e-38 162.9 87 88.5
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.3e-38 162.5 126 65.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 3.0e-38 162.2 139 61.9
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.9e-37 159.5 139 64.0
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 8.1e-36 154.1 130 56.2
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 4.0e-35 151.8 112 62.5
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 5.3e-35 151.4 135 62.2
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.5e-34 149.8 135 63.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.6e-34 149.1 139 59.0
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 9.9e-34 147.1 140 58.6
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 9.9e-34 147.1 140 57.9
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 9.9e-34 147.1 139 59.7
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.9e-33 144.8 139 59.0
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 6.4e-33 144.4 99 66.7
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 8.4e-33 144.1 130 55.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 8.4e-33 144.1 96 82.3
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.1e-32 143.7 130 54.6
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.9e-32 142.9 135 46.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 5.4e-32 141.4 129 59.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 5.4e-32 141.4 131 57.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 5.4e-32 141.4 132 56.1
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.2e-31 140.2 139 57.6
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.2e-31 140.2 123 64.2
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.6e-31 139.8 139 57.6
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.6e-31 139.8 134 54.5
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.1e-31 139.4 122 48.4
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.1e-31 139.4 140 56.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 2.1e-31 139.4 129 56.6
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.7e-31 139.0 140 56.4
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.7e-31 139.0 140 56.4
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.5e-31 138.7 135 47.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.6e-31 138.3 131 57.3
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.6e-31 138.3 139 54.7
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 6.0e-31 137.9 129 53.5
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 6.0e-31 137.9 129 54.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 6.0e-31 137.9 140 56.4
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.0e-30 137.1 140 52.9
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.0e-30 137.1 140 54.3
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.3e-30 136.7 130 56.9
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-30 136.7 139 51.8
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-30 136.7 139 51.8
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.8e-30 136.3 137 51.8
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 2.3e-30 136.0 127 58.3
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.9e-30 135.2 130 56.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 6.7e-30 134.4 132 53.8
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 6.7e-30 134.4 128 56.2
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.7e-30 134.0 130 56.2
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.1e-29 133.7 129 54.3
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.1e-29 133.7 140 55.7
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.5e-29 133.3 138 55.8
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.5e-29 133.3 140 54.3
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.5e-29 133.3 129 51.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-29 133.3 130 56.9
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.9e-29 132.9 132 54.5
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.5e-29 132.5 140 53.6
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.5e-29 132.5 140 53.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 2.5e-29 132.5 132 53.8
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 7.4e-29 131.0 121 61.2
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 9.6e-29 130.6 129 54.3
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.3e-28 130.2 139 53.2
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.1e-28 129.4 140 52.1
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 2.8e-28 129.0 130 53.1
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.8e-28 129.0 129 54.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.6e-28 128.6 136 52.2
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.6e-28 128.6 139 54.0
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.8e-28 128.3 109 56.0
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 6.2e-28 127.9 130 53.1
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 8.1e-28 127.5 129 52.7
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.1e-27 127.1 129 52.7
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.4e-27 126.7 140 54.3
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.0e-27 125.2 140 49.3
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.0e-27 125.2 130 52.3
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 5.3e-27 124.8 136 50.7
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 6.9e-27 124.4 124 57.3
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.2e-26 123.6 127 50.4
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.2e-26 123.6 127 52.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.0e-26 122.9 122 56.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.0e-26 122.9 140 49.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.0e-26 122.9 140 49.3
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.0e-26 122.9 80 65.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.6e-26 122.5 132 50.8
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.6e-26 122.5 128 50.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 3.4e-26 122.1 127 52.0
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.4e-26 122.1 117 55.6
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 4.5e-26 121.7 129 50.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 4.5e-26 121.7 131 50.4
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 5.8e-26 121.3 127 51.2
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 3.8e-25 118.6 134 43.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 3.8e-25 118.6 130 50.0
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 4.9e-25 118.2 133 49.6
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.1e-24 117.1 116 57.8
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.6e-23 113.2 132 48.5
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.0e-23 111.3 114 52.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.8e-22 109.8 118 44.1
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.0e-22 109.0 114 51.8
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 3.9e-22 108.6 116 51.7
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 3.9e-22 108.6 84 53.6
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.1e-21 107.1 118 43.2
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.1e-21 107.1 118 43.2
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.5e-21 106.7 87 49.4
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 2.5e-21 105.9 118 43.2
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 2.5e-21 105.9 118 43.2
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 2.5e-21 105.9 118 43.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 2.5e-21 105.9 87 49.4
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 3.3e-21 105.5 139 44.6
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 3.3e-21 105.5 87 48.3
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 4.3e-21 105.1 135 45.2
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 4.3e-21 105.1 87 48.3
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 5.6e-21 104.8 87 48.3
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.4e-21 104.4 87 51.7
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.4e-21 104.4 87 51.7
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 9.6e-21 104.0 119 41.2
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.3e-20 103.6 135 42.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 3.1e-19 99.0 139 40.3
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.6e-18 95.9 131 42.0
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.5e-18 95.1 99 40.4
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 4.9e-17 91.7 101 52.5
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.4e-16 90.1 121 44.6
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 2.5e-16 89.4 117 40.2
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.2e-15 87.0 95 53.7
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 2.3e-14 82.8 124 36.3
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.5e-13 80.1 67 50.7
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.5e-13 79.3 58 63.8
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.3e-12 77.0 73 47.9
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 1.6e-12 76.6 123 39.8
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.8e-12 75.9 125 38.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 6.3e-12 74.7 140 37.1
FAN02G4205 Fragaria x ananassa HOM05D001969 ORTHO05D003463 5.9e-10 68.2 35 91.4
SalBow8G1290 Salvia bowleyana HOM05D058383 ORTHO05D050794 5.1e-06 55.1 40 55.0
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.1e-06 55.1 67 34.3


User provided reference genes

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