Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0126501 Rosa chinensis HOM05D000265 ORTHO05D000161 8.0e-21 102.8 52 100.0
RcHm_v2.0_Chr4g0435551 Rosa chinensis HOM05D000265 ORTHO05D000161 8.3e-10 66.2 38 86.8
FvH4_4g27693 Fragaria vesca HOM05D000265 ORTHO05D000161 7.0e-09 63.2 38 81.6
FAN12G2008 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.0e-09 63.2 38 81.6
FAN12G2295 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.0e-09 63.2 38 81.6
FAN07G1684 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.2e-08 62.4 38 78.9
FAN22G0257 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.2e-08 62.4 38 78.9
RcHm_v2.0_Chr1g0333421 Rosa chinensis HOM05D000265 ORTHO05D000161 1.6e-08 62.0 35 85.7
CAN.G65.135 Capsicum annuum HOM05D000265 ORTHO05D000161 3.5e-08 60.8 38 78.9
Nitab4.5_0000115g0260 Nicotiana tabacum HOM05D000265 ORTHO05D000161 4.5e-08 60.5 38 76.3
RcHm_v2.0_Chr3g0474511 Rosa chinensis HOM05D000265 ORTHO05D000161 4.5e-08 60.5 41 75.6
Nitab4.5_0003012g0130 Nicotiana tabacum HOM05D000265 ORTHO05D000161 5.9e-08 60.1 35 80.0
FvH4_4g27691 Fragaria vesca HOM05D000265 ORTHO05D000161 1.0e-07 59.3 38 76.3
Solyc06g072910.2 Solanum lycopersicum HOM05D000265 ORTHO05D000161 1.0e-07 59.3 38 73.7
Sopen06g029280 Solanum pennellii HOM05D000265 ORTHO05D000161 1.0e-07 59.3 38 73.7
Lj4g0015519 Lotus japonicus HOM05D000265 ORTHO05D000161 2.2e-07 58.2 38 73.7
Aqoxy3G03947 Aquilegia oxysepala HOM05D000265 ORTHO05D000161 2.9e-07 57.8 38 71.1
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.9e-07 57.8 38 71.1
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.9e-07 57.8 38 71.1
Dinv29181 Davidia involucrata HOM05D000265 ORTHO05D000161 2.9e-07 57.8 38 71.1
Sc11g0003230 Simmondsia chinensis HOM05D000265 ORTHO05D000161 2.9e-07 57.8 38 73.7
Glyma.01G083700 Glycine max HOM05D000265 ORTHO05D000161 3.8e-07 57.4 38 73.7
Glyma.08G260200 Glycine max HOM05D000265 ORTHO05D000161 3.8e-07 57.4 38 73.7
MD13G1044400 Malus domestica HOM05D000265 ORTHO05D000161 3.8e-07 57.4 36 77.8
PGSC0003DMG400027029 Solanum tuberosum HOM05D000265 ORTHO05D000161 3.8e-07 57.4 38 71.1
VMungo1215G2227 Vigna mungo HOM05D000265 ORTHO05D000161 3.8e-07 57.4 38 73.7
CAN.G303.66 Capsicum annuum HOM05D000265 ORTHO05D000161 5.0e-07 57.0 38 73.7
Cpa.g.sc1.194 Carica papaya HOM05D000265 ORTHO05D000161 5.0e-07 57.0 38 71.1
Solyc03g096820.4 Solanum lycopersicum HOM05D000265 ORTHO05D000161 5.0e-07 57.0 38 73.7
Sopen03g027560 Solanum pennellii HOM05D000265 ORTHO05D000161 5.0e-07 57.0 38 73.7
PGSC0003DMG400000543 Solanum tuberosum HOM05D000265 ORTHO05D000161 5.0e-07 57.0 38 73.7
Dinv17272 Davidia involucrata HOM05D000265 ORTHO05D000161 6.5e-07 56.6 38 68.4
BcaB04g20767 Brassica carinata HOM05D000265 ORTHO05D000161 8.5e-07 56.2 38 68.4
BcaC09g48804 Brassica carinata HOM05D000265 ORTHO05D000161 8.5e-07 56.2 38 68.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 8.5e-07 56.2 38 68.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 8.5e-07 56.2 38 68.4
CiPaw.15G129200 Carya illinoinensis HOM05D000265 ORTHO05D000161 8.5e-07 56.2 38 71.1
Thhalv10020343m.g Eutrema salsugineum HOM05D000265 ORTHO05D000161 8.5e-07 56.2 38 68.4
MD16G1045200 Malus domestica HOM05D000265 ORTHO05D000161 8.5e-07 56.2 36 75.0
PGR004G0029 Punica granatum HOM05D000265 ORTHO05D000161 8.5e-07 56.2 36 75.0
Sp3g16550 Schrenkiella parvula HOM05D000265 ORTHO05D000161 8.5e-07 56.2 38 68.4
Hund10233 Selenicereus undatus HOM05D000265 ORTHO05D000161 1.1e-06 55.8 38 71.1
Sc04g0006580 Simmondsia chinensis HOM05D000265 ORTHO05D000161 1.1e-06 55.8 36 75.0
Sc10g0009480 Simmondsia chinensis HOM05D000265 ORTHO05D000161 1.1e-06 55.8 38 68.4
AL3G31730 Arabidopsis lyrata HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 68.4
AT3G18440 Arabidopsis thaliana HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 68.4
Carub.0003s1822 Capsella rubella HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 68.4
CARHR093800 Cardamine hirsuta HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 68.4
Ciclev10031089m.g Citrus clementina HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 71.1
Glyma.05G233300 Glycine max HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 68.4
Phvul.002G082600 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 71.1
Phvul.002G082700 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 1.5e-06 55.5 38 71.1
Atru.chr9.811 Acer truncatum HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Cfa018612 Carpinus fangiana HOM05D000265 ORTHO05D000161 1.9e-06 55.1 36 75.0
Cfa019792 Carpinus fangiana HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Haze_18657 Corylus avellana HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Duzib068G0282 Durio zibethinus HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Duzib205G0737 Durio zibethinus HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Gohir.A09G177700 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Gohir.D09G173200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Gorai.006G195100 Gossypium raimondii HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Manes.14G099700 Manihot esculenta HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Nitab4.5_0001599g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Rhsim09G0110200 Rhododendron simsii HOM05D000265 ORTHO05D000161 1.9e-06 55.1 36 75.0
Sed0018990 Sechium edule HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
THA.LOC104812141 Tarenaya hassleriana HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
Thecc.03G033300 Theobroma cacao HOM05D000265 ORTHO05D000161 1.9e-06 55.1 38 68.4
CSS0042383 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 2.5e-06 54.7 36 75.0
CAN.G438.130 Capsicum annuum HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
CDE06G2267 Ceratophyllum demersum HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
CDE06G2613 Ceratophyllum demersum HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
FvH4_5g12330 Fragaria vesca HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
FAN08G1049 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.5e-06 54.7 38 68.4
FAN18G2366 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.5e-06 54.7 38 68.4
FAN18G2732 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.5e-06 54.7 38 68.4
Nitab4.5_0000021g0280 Nicotiana tabacum HOM05D000265 ORTHO05D000161 2.5e-06 54.7 36 75.0
Nitab4.5_0004412g0020 Nicotiana tabacum HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
Peaxi162Scf00815g00027 Petunia axillaris HOM05D000265 ORTHO05D000161 2.5e-06 54.7 35 74.3
QL01p044072 Quercus lobata HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 71.1
QL93p0176_0013 Quercus lobata HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 71.1
RcHm_v2.0_Chr7g0185231 Rosa chinensis HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 68.4
THA.LOC104810239 Tarenaya hassleriana HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 65.8
THA.LOC104821839 Tarenaya hassleriana HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 65.8
HPP92_024803 Vanilla planifolia HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 65.8
HPP92_024814 Vanilla planifolia HOM05D000265 ORTHO05D000161 2.5e-06 54.7 38 65.8
ATR0665G525 Amborella trichopoda HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 65.8
ClCG05G022870 Citrullus lanatus HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 71.1
MELO3C012230.2 Cucumis melo HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 68.4
MELO3C017298.2 Cucumis melo HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 65.8
CsaV3_1G003740 Cucumis sativus L. HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 65.8
Dinv04485 Davidia involucrata HOM05D000265 ORTHO05D000161 3.2e-06 54.3 36 75.0
Medtr8g104130 Medicago truncatula HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 65.8
Prupe.1G308100 Prunus persica HOM05D000265 ORTHO05D000161 3.2e-06 54.3 36 75.0
QL10p025048 Quercus lobata HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 65.8
Thecc.02G358100 Theobroma cacao HOM05D000265 ORTHO05D000161 3.2e-06 54.3 38 68.4
Aa31LG8G5260 Aethionema arabicum HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 65.8
Cc02_g00480 Coffea canephora HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 68.4
Migut.F00111 Erythranthe guttata HOM05D000265 ORTHO05D000161 4.2e-06 53.9 36 75.0
Gohir.A12G266200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 68.4
Gohir.D12G266400 Gossypium hirsutum HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 68.4
Gorai.008G286300 Gossypium raimondii HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 68.4
Medtr8g104120 Medicago truncatula HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 63.2
Sed0025858 Sechium edule HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 71.1
SGA_v2.0_scaffold18G08499 Striga asiatica HOM05D000265 ORTHO05D000161 4.2e-06 53.9 36 75.0
unitig_90.g27530 Utricularia gibba HOM05D000265 ORTHO05D000161 4.2e-06 53.9 38 68.4
CSS0019072 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 5.5e-06 53.5 38 65.8
CANSAT64G0647 Cannabis sativa HOM05D000265 ORTHO05D000161 5.5e-06 53.5 36 72.2
PGSC0003DMG400005713 Solanum tuberosum HOM05D000265 ORTHO05D000161 5.5e-06 53.5 38 65.8
Ah.11g045020 Amaranthus hybridus HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
CSS0002868 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 68.4
AUR62008269 Chenopodium quinoa HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
AUR62031029 Chenopodium quinoa HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
Ca_25452_v3 Cicer arietinum L. HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 63.2
ClCG06G014910 Citrullus lanatus HOM05D000265 ORTHO05D000161 7.2e-06 53.1 34 70.6
Haze_17457 Corylus avellana HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 68.4
Eucgr.B00717 Eucalyptus grandis HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
Glyma.10G275700 Glycine max HOM05D000265 ORTHO05D000161 7.2e-06 53.1 39 69.2
MBI07_g24750_MAGBIO Magnolia biondii HOM05D002315 ORTHO05D002416 7.2e-06 53.1 38 65.8
MBI19_g25652_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
Manes.01G012600 Manihot esculenta HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 65.8
PGR083G0058 Punica granatum HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 63.2
Rhsim03G0219400 Rhododendron simsii HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 68.4
TPR.G32675 Trifolium pratense HOM05D000265 ORTHO05D000161 7.2e-06 53.1 38 63.2
Actinidia02550 Actinidia chinensis HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
CiPaw.15G005200 Carya illinoinensis HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 68.4
CiPaw.16G004500 Carya illinoinensis HOM05D000265 ORTHO05D000161 9.5e-06 52.8 36 72.2
Ca_11186_v3 Cicer arietinum L. HOM05D000265 ORTHO05D000161 9.5e-06 52.8 39 69.2
Ciclev10019485m.g Citrus clementina HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
COL.COLO4_24684 Corchorus olitorius HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
CsaV3_5G034160 Cucumis sativus L. HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
DCAR_023198 Daucus carota HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 63.2
Rhsim08G0135400 Rhododendron simsii HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
SalBow4G0912 Salvia bowleyana HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 71.1
SHI02474 Sapria himalayana HOM05D000265 ORTHO05D000161 9.5e-06 52.8 36 69.4
Solyc03g119640.4 Solanum lycopersicum HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
Sopen03g038470 Solanum pennellii HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
TWI15G0742 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8
vmacro06484 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 68.4
vmacro10544 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 9.5e-06 52.8 36 69.4
GSVIVG01008270001 Vitis vinifera HOM05D000265 ORTHO05D000161 9.5e-06 52.8 38 65.8


User provided reference genes

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