Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 7.6e-58 227.3 142 100.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 3.5e-34 148.7 149 62.4
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.5e-32 141.4 150 61.3
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.2e-32 141.0 150 62.7
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.2e-32 141.0 150 61.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.1e-11 72.4 41 82.9
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.1e-11 72.0 120 40.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 7.0e-11 71.2 53 67.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-10 70.1 109 36.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 2.7e-10 69.3 52 73.1
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 2.7e-10 69.3 66 60.6
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 7.8e-10 67.8 71 60.6
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.8e-10 67.8 114 38.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.3e-09 67.0 54 64.8
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.7e-09 66.6 78 56.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.3e-09 66.2 50 74.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.9e-09 65.9 46 73.9
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.9e-09 65.9 52 69.2
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.9e-09 65.9 50 68.0
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.8e-09 65.5 44 72.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 3.8e-09 65.5 68 58.8
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.6e-09 64.7 44 72.7
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.6e-09 64.7 117 36.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 8.6e-09 64.3 75 54.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 8.6e-09 64.3 51 66.7
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 8.6e-09 64.3 66 56.1
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 8.6e-09 64.3 45 71.1
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.6e-09 64.3 75 53.3
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 8.6e-09 64.3 62 59.7
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.5e-08 63.5 44 70.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.5e-08 63.5 38 84.2
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.5e-08 63.5 44 70.5
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.5e-08 63.5 75 53.3
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-08 63.5 56 66.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.5e-08 63.5 109 38.5
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.9e-08 63.2 59 62.7
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.9e-08 63.2 59 62.7
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.9e-08 63.2 58 62.1
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.5e-08 62.8 48 75.0
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.5e-08 62.8 44 72.7
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.5e-08 62.8 55 63.6
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.5e-08 62.8 75 52.0
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 2.5e-08 62.8 43 74.4
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.5e-08 62.8 37 81.1
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.3e-08 62.4 62 58.1
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.3e-08 62.4 37 78.4
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 4.3e-08 62.0 45 66.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.3e-08 62.0 62 58.1
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.3e-08 62.0 54 61.1
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.6e-08 61.6 46 67.4
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.6e-08 61.6 46 67.4
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 5.6e-08 61.6 56 58.9
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 5.6e-08 61.6 75 50.7
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 5.6e-08 61.6 45 68.9
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 9.5e-08 60.8 48 68.8
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.2e-07 60.5 51 62.7
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-07 60.5 78 50.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.6e-07 60.1 62 59.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.6e-07 60.1 46 73.9
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.6e-07 60.1 52 63.5
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 2.1e-07 59.7 61 55.7
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.8e-07 59.3 45 64.4
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-07 59.3 43 69.8
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.8e-07 59.3 43 69.8
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.8e-07 59.3 51 62.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.6e-07 58.9 56 57.1
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 3.6e-07 58.9 56 57.1
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 3.6e-07 58.9 40 72.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.6e-07 58.9 50 60.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 47 63.8
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.7e-07 58.5 47 63.8
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 4.7e-07 58.5 51 60.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 56 58.9
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.1e-07 58.2 56 55.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 6.1e-07 58.2 37 81.1
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 6.1e-07 58.2 37 81.1
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 8.0e-07 57.8 55 60.0
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 8.0e-07 57.8 48 60.4
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 8.0e-07 57.8 71 49.3
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 8.0e-07 57.8 54 59.3
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.0e-07 57.8 35 77.1
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.0e-07 57.8 35 77.1
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 8.0e-07 57.8 60 53.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 8.0e-07 57.8 60 53.3
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 1.0e-06 57.4 45 71.1
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.0e-06 57.4 35 74.3
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-06 57.4 40 70.0
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-06 57.4 40 70.0
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-06 57.4 40 70.0
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.0e-06 57.4 47 61.7
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.0e-06 57.4 53 56.6
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 40 70.0
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 37 73.0
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 39 71.8
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 39 71.8
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 40 70.0
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 1.4e-06 57.0 37 73.0
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 37 73.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 39 71.8
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 39 71.8
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 43 67.4
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-06 57.0 50 58.0
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.8e-06 56.6 52 61.5
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.8e-06 56.6 52 61.5
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.8e-06 56.6 52 61.5
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.8e-06 56.6 51 64.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.8e-06 56.6 38 71.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.8e-06 56.6 80 48.8
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.8e-06 56.6 66 48.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 1.8e-06 56.6 48 60.4
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 1.8e-06 56.6 55 54.5
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 1.8e-06 56.6 55 54.5
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.8e-06 56.6 39 66.7
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 1.8e-06 56.6 61 52.5
Migut.K00136 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.3e-06 56.2 36 72.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 2.3e-06 56.2 38 73.7
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 2.3e-06 56.2 75 52.0
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 2.3e-06 56.2 45 64.4
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.3e-06 56.2 55 56.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.3e-06 56.2 80 41.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.0e-06 55.8 48 58.3
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 44 65.9
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 39 71.8
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 38 68.4
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.0e-06 55.8 39 71.8
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 3.0e-06 55.8 35 74.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 46 58.7
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 4.0e-06 55.5 37 70.3
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 4.0e-06 55.5 46 58.7
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-06 55.5 49 61.2
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 38 71.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 4.0e-06 55.5 40 67.5
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.0e-06 55.5 55 50.9
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 4.0e-06 55.5 48 58.3
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 5.2e-06 55.1 38 71.1
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.2e-06 55.1 38 68.4
ClCG02G016910 Citrullus lanatus HOM05D009218 ORTHO05D010069 5.2e-06 55.1 82 46.3
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.1 49 61.2
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 5.2e-06 55.1 38 68.4
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 5.2e-06 55.1 38 68.4
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 5.2e-06 55.1 48 54.2
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 6.8e-06 54.7 39 69.2
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.8e-06 54.7 45 57.8
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 6.8e-06 54.7 52 61.5
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.8e-06 54.7 35 74.3
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 6.8e-06 54.7 71 47.9
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 6.8e-06 54.7 43 62.8
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.9e-06 54.3 49 57.1
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.9e-06 54.3 49 59.2
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 8.9e-06 54.3 51 56.9


User provided reference genes

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