Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0123811 Rosa chinensis HOM05D001120 ORTHO05D002943 2.1e-48 195.3 92 100.0
RcHm_v2.0_Chr4g0391111 Rosa chinensis HOM05D001120 ORTHO05D002943 3.8e-42 174.5 85 95.3
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 8.8e-31 136.7 77 81.8
FvH4_7g28431 Fragaria vesca HOM05D001120 ORTHO05D002943 7.5e-30 133.7 80 81.2
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.7e-30 133.3 80 80.0
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.7e-30 133.3 80 80.0
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.7e-29 131.3 80 80.0
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.2e-29 130.2 79 79.7
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.2e-29 130.2 79 79.7
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.4e-28 128.6 82 79.3
RcHm_v2.0_Chr5g0031101 Rosa chinensis HOM05D001422 ORTHO05D001321 2.2e-26 122.1 63 88.9
RcHm_v2.0_Chr4g0406741 Rosa chinensis HOM05D001120 ORTHO05D002943 4.2e-25 117.9 60 91.7
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 2.7e-24 115.2 81 64.2
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 8.0e-24 113.6 77 66.2
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 8.0e-24 113.6 78 62.8
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 8.0e-24 113.6 81 64.2
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 8.0e-24 113.6 80 62.5
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 4.0e-23 111.3 79 64.6
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 4.0e-23 111.3 79 64.6
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 4.0e-23 111.3 79 58.2
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 4.0e-23 111.3 79 58.2
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 4.0e-23 111.3 79 64.6
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 5.2e-23 110.9 79 60.8
vmacro06756 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 6.8e-23 110.5 74 64.9
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 8.8e-23 110.2 77 63.6
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 8.8e-23 110.2 76 65.8
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 8.8e-23 110.2 79 64.6
MD07G1015000 Malus domestica HOM05D001120 ORTHO05D002943 1.5e-22 109.4 73 68.5
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 1.5e-22 109.4 77 63.6
MD07G1260500 Malus domestica HOM05D001120 ORTHO05D002943 2.0e-22 109.0 73 68.5
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 2.6e-22 108.6 79 59.5
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 3.4e-22 108.2 76 67.1
QL12p039198 Quercus lobata HOM05D001120 ORTHO05D002943 3.4e-22 108.2 78 62.8
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 4.4e-22 107.8 73 65.8
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 4.4e-22 107.8 73 68.5
Nn1g01163 Nelumbo nucifera HOM05D001120 ORTHO05D002943 4.4e-22 107.8 79 64.6
Psat1g105640 Pisum sativum HOM05D001120 ORTHO05D002943 4.4e-22 107.8 77 64.9
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 5.7e-22 107.5 75 65.3
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 7.5e-22 107.1 77 63.6
CsaV3_3G016470 Cucumis sativus L. HOM05D001120 ORTHO05D002943 9.8e-22 106.7 75 68.0
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 9.8e-22 106.7 73 63.0
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 9.8e-22 106.7 73 63.0
CSS0048333 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.3e-21 106.3 73 64.4
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 1.3e-21 106.3 77 62.3
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 1.3e-21 106.3 73 64.4
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 1.3e-21 106.3 80 58.8
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 1.7e-21 105.9 77 63.6
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.7e-21 105.9 79 63.3
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 2.2e-21 105.5 80 58.8
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 2.8e-21 105.1 77 61.0
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 2.8e-21 105.1 75 64.0
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 2.8e-21 105.1 75 64.0
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 3.7e-21 104.8 73 63.0
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 4.8e-21 104.4 78 62.8
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 8.3e-21 103.6 73 63.0
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 8.3e-21 103.6 75 65.3
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 1.4e-20 102.8 80 58.8
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 1.4e-20 102.8 80 56.2
CSS0024775 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 3.1e-20 101.7 73 61.6
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 3.1e-20 101.7 75 60.0
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 3.1e-20 101.7 73 58.9
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 3.1e-20 101.7 73 58.9
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 3.1e-20 101.7 73 63.0
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 4.1e-20 101.3 73 61.6
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 4.1e-20 101.3 76 61.8
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 5.4e-20 100.9 73 61.6
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 7.0e-20 100.5 76 61.8
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 9.1e-20 100.1 81 54.3
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 1.6e-19 99.4 73 57.5
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 2.7e-19 98.6 76 52.6
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 2.7e-19 98.6 81 53.1
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 2.7e-19 98.6 73 57.5
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 4.5e-19 97.8 73 57.5
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 5.9e-19 97.4 76 60.5
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 5.9e-19 97.4 72 58.3
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 5.9e-19 97.4 72 56.9
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 7.7e-19 97.1 71 59.2
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 7.7e-19 97.1 80 56.2
Dinv08003 Davidia involucrata HOM05D001120 ORTHO05D002943 1.0e-18 96.7 73 60.3
Gohir.A07G039900 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.0e-18 96.7 85 55.3
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 1.0e-18 96.7 75 61.3
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 1.0e-18 96.7 73 57.5
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 1.3e-18 96.3 73 56.2
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.3e-18 96.3 81 54.3
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 1.3e-18 96.3 81 54.3
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 1.3e-18 96.3 78 56.4
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 1.3e-18 96.3 81 54.3
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 1.3e-18 96.3 70 60.0
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 1.3e-18 96.3 77 58.4
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 2.2e-18 95.5 75 61.3
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 2.9e-18 95.1 77 55.8
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 3.8e-18 94.7 79 55.7
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 1.1e-17 93.2 77 54.5
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 1.5e-17 92.8 80 51.2
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 1.5e-17 92.8 78 55.1
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 1.5e-17 92.8 81 55.6
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.5e-17 92.8 74 56.8
RcHm_v2.0_Chr1g0375391 Rosa chinensis HOM05D001120 ORTHO05D002943 1.5e-17 92.8 93 54.8
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.5e-17 92.8 70 60.0
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.5e-17 92.8 80 52.5
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 1.9e-17 92.4 65 61.5
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 2.5e-17 92.0 71 57.7
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 2.5e-17 92.0 79 55.7
Glyma.12G117400 Glycine max HOM05D001120 ORTHO05D002943 7.2e-17 90.5 79 53.2
Oeu021740.1 Olea europaea HOM05D001120 ORTHO05D002943 9.5e-17 90.1 85 50.6
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 2.1e-16 89.0 66 59.1
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 3.6e-16 88.2 80 52.5
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 3.6e-16 88.2 78 50.0
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 4.7e-16 87.8 81 53.1
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 6.1e-16 87.4 78 50.0
arahy.Tifrunner.gnm1.ann1.BDNL9H Arachis hypogaea HOM05D001120 ORTHO05D002943 1.4e-15 86.3 75 56.0
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 3.0e-15 85.1 75 54.7
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 3.0e-15 85.1 80 50.0
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 3.0e-15 85.1 80 50.0
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 3.0e-15 85.1 80 50.0
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 3.0e-15 85.1 78 48.7
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 3.0e-15 85.1 67 55.2
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 4.0e-15 84.7 80 48.8
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 4.0e-15 84.7 80 52.5
BraA10t43035Z Brassica rapa HOM05D001120 ORTHO05D002943 8.8e-15 83.6 80 51.2
arahy.Tifrunner.gnm1.ann1.XVWX7G Arachis hypogaea HOM05D001120 ORTHO05D002943 2.0e-14 82.4 73 53.4
Medtr6g079410 Medicago truncatula HOM05D001120 ORTHO05D002943 2.0e-14 82.4 73 54.8
vmacro09881 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 2.6e-14 82.0 75 50.7
THA.LOC104825185 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 5.7e-14 80.9 80 45.0
arahy.Tifrunner.gnm1.ann1.Q1XR2M Arachis hypogaea HOM05D001120 ORTHO05D002943 9.8e-14 80.1 75 52.0
Pp3c23_3440 Physcomitrium patens HOM05D001120 ORTHO05D002943 1.7e-13 79.3 66 53.0
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.7e-13 79.3 69 50.7
arahy.Tifrunner.gnm1.ann1.2Y8ZXL Arachis hypogaea HOM05D001120 ORTHO05D002943 2.8e-13 78.6 78 50.0
arahy.Tifrunner.gnm1.ann1.ZX35QI Arachis hypogaea HOM05D001120 ORTHO05D002943 4.9e-13 77.8 75 50.7
Mapoly0030s0021 Marchantia polymorpha HOM05D001120 ORTHO05D002943 6.3e-13 77.4 66 51.5
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 8.3e-13 77.0 68 47.1
SGA_v2.0_scaffold337G49175 Striga asiatica HOM05D001120 ORTHO05D002943 8.3e-13 77.0 57 59.6
arahy.Tifrunner.gnm1.ann1.E4F5HJ Arachis hypogaea HOM05D001120 ORTHO05D002943 1.8e-12 75.9 71 52.1
Phvul.011G124600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 7.0e-12 73.9 79 49.4
THA.LOC104825079 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 9.2e-12 73.6 70 45.7
THA.LOC104825082 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 9.2e-12 73.6 71 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1247 Anthoceros agrestis HOM05D001120 ORTHO05D002943 1.2e-11 73.2 66 50.0
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 1.6e-11 72.8 81 49.4
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.6e-11 72.8 81 49.4
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.6e-11 72.8 81 49.4
Gohir.D07G044000 Gossypium hirsutum HOM05D001120 ORTHO05D002943 3.5e-11 71.6 78 46.2
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 7.8e-11 70.5 81 45.7
THA.LOC104825078 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 2.3e-10 68.9 77 44.2
PSO832G4332 Papaver somniferum HOM05D001120 ORTHO05D002943 8.6e-10 67.0 76 44.7
SMO172G0194 Selaginella moellendorffii HOM05D001120 ORTHO05D002943 1.1e-09 66.6 69 49.3
CBR_g433 Chara braunii HOM05D001120 ORTHO05D002943 7.3e-09 63.9 62 43.5
arahy.Tifrunner.gnm1.ann1.1V5DEN Arachis hypogaea HOM05D001120 ORTHO05D002943 2.1e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.A2YXVA Arachis hypogaea HOM05D001120 ORTHO05D002943 2.1e-08 62.4 60 50.0
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 2.8e-08 62.0 84 42.9
arahy.Tifrunner.gnm1.ann1.35XLXM Arachis hypogaea HOM05D001120 ORTHO05D002943 3.6e-08 61.6 59 50.8
arahy.Tifrunner.gnm1.ann1.W17802 Arachis hypogaea HOM05D001120 ORTHO05D002943 3.6e-08 61.6 59 50.8
THA.LOC104798865 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 3.6e-08 61.6 78 39.7
ECA233G0610 Erigeron canadensis HOM05D001120 ORTHO05D002943 4.7e-08 61.2 52 55.8
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 1.4e-07 59.7 61 49.2
FvH4_7g28430 Fragaria vesca HOM05D001120 ORTHO05D002943 1.4e-07 59.7 53 56.6
FAN06G4681 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.4e-07 59.7 53 56.6
FAN10G3067 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.4e-07 59.7 53 56.6
PSO210G7235 Papaver somniferum HOM05D001120 ORTHO05D002943 4.0e-07 58.2 67 47.8
FAN06G2717 Fragaria x ananassa HOM05D001120 ORTHO05D002943 5.2e-07 57.8 53 54.7
PSO478G1088 Papaver somniferum HOM05D001120 ORTHO05D002943 1.2e-06 56.6 62 50.0
Eucgr.A02866 Eucalyptus grandis HOM05D001120 ORTHO05D002943 9.8e-06 53.5 52 51.9


User provided reference genes

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