Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.8e-108 396.0 200 100.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 4.8e-106 387.9 200 97.0
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.5e-104 382.9 200 95.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.1e-102 376.7 200 93.5
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.5e-99 365.5 191 94.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-98 362.8 191 93.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-98 362.1 191 93.7
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.2e-80 303.5 197 73.6
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 3.8e-79 298.5 197 76.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 6.5e-79 297.7 197 72.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 4.2e-78 295.0 199 72.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 4.2e-78 295.0 198 73.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 4.6e-77 291.6 197 72.1
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.3e-76 289.3 197 71.6
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.0e-76 288.9 199 71.4
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 3.0e-76 288.9 197 69.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.0e-76 288.9 197 69.0
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.5e-75 286.6 197 69.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.6e-75 285.8 197 70.1
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 9.7e-75 283.9 197 68.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.7e-74 283.1 197 68.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.2e-74 282.7 197 68.5
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.7e-74 282.0 197 68.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 8.2e-74 280.8 198 68.7
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.4e-73 280.0 197 68.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.4e-73 279.3 197 68.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 6.9e-73 277.7 200 66.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.1e-73 277.3 197 69.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 4.5e-72 275.0 200 66.5
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.2e-71 272.7 198 66.7
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.5e-71 270.8 191 67.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.5e-70 269.2 199 67.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.5e-70 269.2 199 67.3
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.2e-70 268.9 200 66.5
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 9.4e-70 267.3 197 63.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.4e-70 267.3 199 67.8
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 9.4e-70 267.3 199 67.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.2e-69 266.9 199 67.3
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.6e-69 265.4 197 64.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 4.7e-69 265.0 197 68.0
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 4.7e-69 265.0 200 64.5
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.0e-68 263.8 199 66.8
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.0e-68 262.3 200 64.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.2e-68 261.5 200 65.0
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 6.7e-68 261.2 197 63.5
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.1e-67 260.4 197 66.5
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.6e-67 259.2 200 64.0
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 5.7e-67 258.1 200 60.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.4e-67 257.7 203 63.1
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.4e-67 257.7 203 63.1
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 7.4e-67 257.7 193 66.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.3e-66 256.9 200 64.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.2e-66 256.1 200 63.5
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.8e-66 255.8 200 62.5
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.8e-66 255.8 197 62.9
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 2.8e-66 255.8 197 63.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 3.7e-66 255.4 199 64.8
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 8.2e-66 254.2 197 62.4
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.1e-65 252.3 200 61.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.3e-65 251.5 198 63.1
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 9.1e-65 250.8 197 61.9
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 9.1e-65 250.8 197 61.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 2.0e-64 249.6 197 60.4
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.6e-64 249.2 194 62.9
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.5e-64 248.8 202 60.9
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 3.5e-64 248.8 196 58.7
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 5.9e-64 248.1 200 60.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 7.7e-64 247.7 200 62.5
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.0e-63 247.3 200 60.5
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.9e-63 245.7 197 59.9
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.8e-63 245.4 200 66.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.8e-63 245.4 194 62.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.0e-63 245.0 196 58.2
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.5e-63 244.6 196 58.2
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.9e-62 243.0 198 60.1
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.5e-62 242.7 197 60.4
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 9.4e-62 240.7 198 62.6
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.6e-61 238.8 194 60.8
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.7e-61 238.4 200 61.5
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 4.7e-61 238.4 197 60.4
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-61 238.4 197 59.4
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 4.7e-61 238.4 197 59.4
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 8.0e-61 237.7 198 58.6
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.8e-60 236.5 198 59.1
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.0e-60 235.3 184 64.1
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 4.0e-60 235.3 224 55.4
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.2e-59 233.8 197 58.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-59 233.4 195 59.0
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.6e-59 232.6 224 55.8
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.3e-59 232.3 192 58.9
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.3e-59 232.3 192 58.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 4.4e-59 231.9 230 55.2
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 5.7e-59 231.5 265 49.1
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-58 230.3 194 58.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 6.3e-58 228.0 223 54.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.1e-57 227.3 250 50.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.4e-57 226.1 195 57.9
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 2.4e-57 226.1 224 54.0
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.1e-57 225.3 232 51.7
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 7.0e-57 224.6 205 59.0
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.2e-56 223.8 197 57.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.6e-56 223.4 171 64.3
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 5.0e-55 218.4 230 49.6
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 5.0e-55 218.4 145 72.4
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 8.5e-55 217.6 148 68.9
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.9e-54 216.5 224 50.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.6e-53 213.4 231 50.6
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.1e-53 213.0 230 50.0
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.7e-53 212.6 230 49.1
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.7e-53 212.6 230 48.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.0e-52 210.7 171 57.9
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 6.8e-52 208.0 194 49.0
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.2e-51 207.2 192 53.1
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.8e-50 202.6 147 69.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.1e-49 200.7 200 48.0
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.6e-48 196.8 150 66.0
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.0e-48 196.4 202 53.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.0e-48 196.4 136 68.4
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 4.5e-48 195.3 144 64.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.5e-48 195.3 252 44.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 7.2e-46 188.0 193 53.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 4.7e-45 185.3 197 46.2
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 4.7e-45 185.3 197 46.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.8e-44 183.3 193 51.8
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.0e-44 182.2 172 57.6
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 6.8e-44 181.4 200 48.0
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-43 180.6 154 58.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.7e-42 176.8 156 57.7
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 2.2e-42 176.4 200 54.5
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.7e-40 169.5 197 43.1
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.3e-39 167.2 200 46.5
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.1e-38 164.1 189 47.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.5e-38 163.7 119 58.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.2e-37 160.6 148 55.4
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.8e-35 151.8 191 44.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.7e-34 150.2 114 64.9
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-33 147.5 113 68.1
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.1e-33 147.5 198 39.9
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 9.2e-33 144.4 111 67.6
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.0e-32 143.3 114 58.8
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 7.8e-32 141.4 151 53.6
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.0e-31 141.0 197 41.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.3e-31 139.8 197 35.5
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.6e-29 133.7 120 55.0
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.8e-28 130.2 113 56.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.2e-27 127.5 112 57.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.2e-26 123.2 86 65.1
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-24 115.9 79 72.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.2e-21 107.5 187 35.8
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.0e-19 100.1 205 31.7
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.9e-14 83.6 66 56.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 2.5e-14 83.2 206 28.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.6e-13 79.3 58 70.7
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.9e-11 71.2 56 66.1
FAN02G3255 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-07 60.5 33 90.9
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.1e-06 57.8 49 53.1
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 5.6e-06 55.5 50 54.0


User provided reference genes

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