Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 3.4e-124 448.4 226 100.0
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.0e-112 407.9 223 91.5
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 6.6e-112 407.5 223 91.9
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.5e-111 406.4 223 91.5
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.5e-111 406.4 223 91.5
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-111 405.6 223 91.5
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 6.6e-104 380.9 223 84.8
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.3e-103 377.5 218 87.2
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 7.3e-103 377.5 225 83.1
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.1e-101 373.6 223 82.1
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 5.2e-101 371.3 225 82.2
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 3.4e-100 368.6 223 79.4
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 4.4e-100 368.2 223 79.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 4.4e-100 368.2 223 79.4
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 5.8e-100 367.9 223 78.9
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 5.8e-100 367.9 223 78.5
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 7.5e-100 367.5 223 78.0
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 7.5e-100 367.5 225 81.3
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.7e-99 366.3 223 78.9
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.9e-99 365.5 223 80.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 2.9e-99 365.5 223 79.4
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 6.4e-99 364.4 223 78.9
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-98 363.6 223 77.1
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.1e-98 363.6 223 77.1
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.4e-98 363.2 223 77.6
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 2.4e-98 362.5 223 78.5
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 2.4e-98 362.5 223 76.7
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 2.4e-98 362.5 223 76.7
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.4e-98 361.3 223 76.2
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 7.1e-98 360.9 223 78.0
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 9.2e-98 360.5 223 76.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.2e-97 360.1 223 79.4
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.6e-97 359.8 223 78.0
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 2.1e-97 359.4 223 78.0
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.5e-97 358.6 223 79.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 3.5e-97 358.6 223 78.9
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 4.6e-97 358.2 223 78.9
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.3e-96 356.7 223 78.5
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.3e-96 356.7 223 77.1
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.3e-96 355.9 223 78.0
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 3.9e-96 355.1 223 77.1
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 5.1e-96 354.8 234 73.5
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.5e-95 353.2 223 76.2
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.9e-95 352.8 223 76.2
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.5e-95 352.4 225 73.8
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.5e-95 352.4 223 77.6
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 2.5e-95 352.4 223 75.3
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 4.3e-95 351.7 225 75.1
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 9.5e-95 350.5 223 76.7
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.2e-94 350.1 223 75.3
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.2e-94 350.1 225 73.3
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.6e-94 349.7 223 76.2
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 2.1e-94 349.4 223 76.7
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.8e-94 349.0 223 75.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.7e-94 348.2 225 75.1
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.7e-94 348.2 223 76.2
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.1e-93 347.1 223 74.9
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 3.1e-93 345.5 223 74.4
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.1e-93 345.5 219 74.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 3.1e-93 345.5 224 76.3
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 6.8e-93 344.4 223 74.0
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.0e-92 342.8 223 73.1
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.0e-92 342.8 223 75.8
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 2.0e-92 342.8 223 73.5
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 2.6e-92 342.4 223 70.9
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 3.4e-92 342.0 233 73.4
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 1.7e-91 339.7 223 74.0
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.2e-91 339.3 223 72.6
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 2.9e-91 339.0 224 72.8
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.9e-91 339.0 223 73.1
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 3.7e-91 338.6 223 74.4
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 4.9e-91 338.2 224 75.0
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.1e-90 337.0 224 74.1
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.1e-90 337.0 224 74.1
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.4e-90 336.7 223 73.1
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.9e-90 336.3 224 74.1
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.2e-90 335.5 224 73.2
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 4.1e-90 335.1 227 72.7
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.1e-90 334.3 223 72.2
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 9.2e-90 334.0 216 76.4
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 9.2e-90 334.0 223 71.7
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.1e-89 332.8 223 75.8
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.7e-89 332.4 225 74.2
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 3.5e-89 332.0 223 73.5
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.6e-89 331.6 282 61.3
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 4.6e-89 331.6 224 74.1
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 7.8e-89 330.9 223 71.3
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.0e-88 330.5 224 72.3
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.0e-88 330.5 208 76.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.0e-88 330.5 208 77.4
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.3e-88 330.1 224 72.8
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.1e-88 328.2 259 64.9
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.6e-88 327.8 224 72.8
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.6e-88 327.8 227 74.4
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.1e-87 327.0 224 73.2
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.1e-87 327.0 207 76.3
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.5e-87 326.6 227 74.4
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.3e-87 325.5 227 74.0
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 4.3e-87 325.1 227 74.0
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 4.3e-87 325.1 223 70.0
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-86 323.2 223 77.6
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 8.1e-86 320.9 227 72.2
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.4e-85 320.1 227 71.8
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 3.1e-85 318.9 207 73.9
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.0e-85 318.5 235 66.4
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 6.8e-85 317.8 223 69.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 1.2e-84 317.0 227 72.2
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.2e-84 317.0 207 74.4
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.6e-84 315.8 227 72.2
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.6e-84 315.8 227 71.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 2.6e-84 315.8 207 73.4
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 4.4e-84 315.1 227 71.4
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.4e-84 315.1 223 70.4
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.8e-84 314.7 212 70.3
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.8e-84 314.7 210 73.8
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 7.6e-84 314.3 227 71.8
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 9.9e-84 313.9 227 71.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 2.2e-83 312.8 224 69.2
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-82 310.5 227 70.9
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.4e-82 310.1 207 72.0
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.9e-82 309.7 223 67.3
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 1.9e-82 309.7 254 62.6
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.0e-80 303.9 224 66.5
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.3e-80 303.5 226 66.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.7e-80 303.1 213 71.8
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 5.1e-80 301.6 226 67.7
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 5.1e-80 301.6 223 64.6
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 5.1e-80 301.6 223 64.6
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.5e-79 300.1 223 69.1
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 6.9e-77 291.2 225 67.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 6.9e-77 291.2 225 67.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 9.0e-77 290.8 208 64.9
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.2e-75 286.2 174 78.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 2.9e-75 285.8 213 69.0
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.9e-75 285.8 223 63.7
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.4e-75 284.6 223 64.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.5e-71 273.5 214 65.9
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.3e-71 271.9 224 65.2
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 9.6e-71 270.8 223 58.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.3e-70 270.4 223 64.1
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.8e-70 269.2 180 71.7
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 2.0e-68 263.1 222 57.2
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 6.4e-67 258.1 174 69.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.6e-65 251.9 282 51.4
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.1e-58 230.7 193 65.3
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.3e-56 223.8 227 56.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.3e-56 223.0 214 60.3
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 3.0e-56 222.6 172 68.0
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.3e-54 217.2 184 60.3
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 2.8e-54 216.1 177 59.3
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.3e-53 211.8 172 63.4
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.5e-51 204.9 201 60.2
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 3.2e-50 202.6 122 74.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 2.2e-46 189.9 132 66.7
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.1e-41 173.3 122 68.0
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.0e-40 169.5 188 50.0
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.7e-38 163.7 235 43.8
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.7e-32 141.7 157 54.8
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 4.1e-29 132.5 83 68.7
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 9.4e-26 121.3 159 48.4
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-23 114.0 120 49.2
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.3e-21 105.5 94 57.4
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.0e-17 91.7 152 43.4
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.0e-16 91.3 206 29.6
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.0e-15 87.0 52 84.6
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.0e-09 65.1 46 67.4
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.2e-08 62.4 53 62.3
TAR636G0763 Trochodendron aralioides HOM05D000008 ORTHO05D415803 1.7e-06 57.4 48 60.4


User provided reference genes

Program Settings