Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 6.8e-150 534.3 330 100.0
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 5.1e-121 438.3 325 88.6
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.1e-121 438.3 325 88.6
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.2e-119 431.4 325 87.7
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.9e-117 424.1 303 84.2
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.9e-96 356.7 321 78.5
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 6.2e-95 351.7 318 73.0
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.4e-94 350.5 318 62.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.2e-92 343.2 318 61.3
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.8e-92 342.4 311 63.3
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 6.5e-92 341.7 298 65.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.0e-89 334.3 318 62.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.9e-89 332.4 318 58.5
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 8.7e-89 331.3 294 66.3
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.5e-88 329.7 312 64.4
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 9.7e-88 327.8 298 62.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.6e-87 327.0 213 76.1
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 3.7e-87 325.9 291 61.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 8.2e-87 324.7 213 75.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.4e-86 323.9 315 55.9
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 3.1e-86 322.8 293 65.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.1e-86 322.4 300 63.3
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.3e-86 322.0 327 55.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.2e-85 320.9 287 67.6
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.0e-85 320.1 292 63.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.4e-85 319.3 327 65.4
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 5.9e-85 318.5 287 63.8
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.2e-84 316.6 296 63.5
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.2e-84 316.6 292 62.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.9e-84 316.2 298 59.1
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.8e-84 315.8 300 62.0
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.0e-84 315.5 293 59.4
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 6.5e-84 315.1 289 62.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 8.5e-84 314.7 283 70.0
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.1e-83 314.3 291 60.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.1e-83 314.3 279 60.9
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.4e-83 313.9 297 63.6
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 4.2e-83 312.4 290 60.3
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 4.2e-83 312.4 319 53.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.5e-83 312.0 306 60.1
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 9.4e-83 311.2 274 61.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.1e-82 310.1 297 57.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.7e-82 309.7 298 56.4
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.7e-82 309.7 306 59.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.7e-82 309.7 294 60.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.6e-82 309.3 308 61.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 4.6e-82 308.9 321 65.4
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.4e-81 307.4 304 56.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 3.9e-81 305.8 284 69.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.7e-81 305.1 285 66.0
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.7e-81 305.1 304 59.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 6.7e-81 305.1 266 76.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 8.8e-81 304.7 291 57.0
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.1e-80 304.3 294 57.5
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-80 304.3 310 58.1
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.5e-80 303.1 199 72.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.3e-80 302.8 298 71.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.3e-80 302.4 277 57.0
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 5.7e-80 302.0 277 66.4
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.4e-80 301.6 272 59.6
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 9.7e-80 301.2 301 56.5
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.7e-79 300.4 296 58.4
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.8e-79 299.7 339 58.7
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 6.3e-79 298.5 297 58.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 6.3e-79 298.5 296 57.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 8.2e-79 298.1 225 68.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.1e-78 297.7 297 55.2
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.1e-78 297.7 211 69.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.4e-78 297.4 303 66.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.4e-78 297.4 285 56.8
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.4e-78 297.4 299 63.9
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.4e-78 296.6 218 67.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 3.1e-78 296.2 285 57.5
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 5.3e-78 295.4 296 60.5
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 9.1e-78 294.7 218 67.9
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.2e-77 294.3 303 64.0
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.5e-77 293.9 298 68.1
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.0e-77 293.5 300 67.0
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 2.0e-77 293.5 301 67.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.0e-77 293.5 300 67.0
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-77 293.1 266 68.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.6e-77 293.1 222 67.6
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.4e-77 292.7 289 60.2
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.4e-77 292.7 292 70.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.5e-77 292.4 283 66.4
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 4.5e-77 292.4 301 67.1
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.5e-77 292.4 272 65.1
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.9e-77 292.0 295 71.5
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.0e-76 291.2 300 64.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.2e-76 290.0 298 58.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.9e-76 289.7 300 63.7
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.8e-76 289.3 299 63.9
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 8.5e-76 288.1 210 68.6
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.4e-75 287.3 305 63.3
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 6.1e-74 282.0 220 65.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.0e-73 281.2 299 68.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.0e-73 281.2 281 71.5
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.9e-73 279.3 239 61.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 6.7e-73 278.5 293 56.0
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.3e-71 274.2 360 48.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 4.8e-71 272.3 274 54.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.7e-66 256.5 251 60.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.7e-65 251.9 191 64.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.6e-64 250.0 267 54.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.3e-63 247.7 228 56.6
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.2e-63 246.9 239 69.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.3e-62 242.3 292 56.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.0e-60 238.0 153 71.9
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.5e-59 234.2 245 54.7
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.0e-57 226.5 215 54.9
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 6.8e-57 225.3 233 50.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.4e-54 217.6 143 75.5
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.4e-54 215.7 201 51.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.0e-53 213.8 190 53.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.4e-46 190.3 188 51.1
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.4e-46 189.1 213 47.9
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.1e-43 181.4 135 61.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.5e-40 171.0 140 65.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.1e-35 154.8 208 39.9
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.1e-35 154.8 256 44.9
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.5e-35 154.5 177 44.1
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.6e-34 151.0 128 63.3
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.6e-34 149.8 129 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 6.4e-31 139.0 155 46.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.6e-26 124.4 151 47.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-25 120.9 210 30.0
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.4e-24 116.3 207 32.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.2e-21 108.2 68 75.0
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.3e-17 94.0 156 53.8
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.9e-15 87.0 137 40.1
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.7e-13 80.5 183 28.4
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.1e-11 75.1 199 29.1
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.1e-10 70.9 164 31.1
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.2e-10 69.3 217 26.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 5.2e-09 66.2 62 59.7
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.2e-09 66.2 66 53.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 6.4e-07 59.3 96 28.1


User provided reference genes

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