Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 2534.2 1314 100.0
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 2200.2 1328 87.5
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2188.3 1364 85.3
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2172.9 1327 86.7
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2152.1 1364 84.2
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 2143.2 1366 83.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1768.1 1339 70.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1540.4 1359 62.2
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1521.5 1488 57.3
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1496.5 1360 60.5
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1468.4 1356 59.1
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1465.7 1358 59.4
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1460.3 1359 59.5
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1452.6 1352 59.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1450.6 1352 59.5
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1449.1 1359 59.6
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1438.7 1380 57.8
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1436.0 1360 58.6
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1435.6 1352 59.0
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1427.9 1435 56.3
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1394.0 1349 57.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1389.4 1348 57.0
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1366.7 1367 56.3
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1337.8 1337 55.4
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1334.3 1340 55.2
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1330.5 1353 54.7
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1328.9 1343 55.3
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1326.6 1360 55.1
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1325.8 1355 55.7
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1319.3 1358 54.9
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1317.0 1343 54.7
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1315.8 1385 53.9
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1313.1 1343 55.7
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1311.2 1343 54.7
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1301.6 1357 54.8
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1300.4 1337 54.7
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1300.4 1341 53.6
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1294.3 1361 54.7
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1281.9 1393 52.3
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1279.2 1470 51.8
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1270.0 1361 53.0
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1265.4 1417 52.3
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1259.6 1333 53.1
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1257.7 1366 52.2
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1246.9 1346 52.8
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1245.3 1345 53.1
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1241.9 1373 52.0
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1239.2 1348 52.7
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1233.8 1369 53.1
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1232.6 1337 52.9
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1230.3 1353 52.1
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1229.5 1359 52.6
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1227.2 1357 52.2
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1210.7 1353 51.5
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1209.5 1346 51.3
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1209.5 1364 51.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1203.0 1375 50.9
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1198.0 1350 51.3
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1179.5 1405 50.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1177.5 1359 50.5
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1177.5 1372 50.6
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1176.0 1376 50.6
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1174.1 1359 49.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1171.0 1350 49.9
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1170.2 1428 48.4
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1169.1 1347 51.4
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1168.3 1383 49.5
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1166.4 1353 49.7
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1162.5 1337 49.2
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1159.1 1354 49.3
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1157.1 1333 49.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1154.8 1343 49.3
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1154.8 1343 49.5
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1154.4 1354 48.9
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1154.0 1334 50.1
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1153.7 1358 49.3
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1153.7 1358 49.3
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1153.7 1358 49.3
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1152.1 1351 50.1
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1151.0 1348 49.6
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1149.0 1359 50.0
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1145.6 1393 49.5
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1126.7 1408 47.4
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1124.0 1354 48.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1119.8 1292 50.4
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1097.8 1348 48.1
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 9.8e-309 1063.9 1057 56.5
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 2.3e-302 1042.7 1338 47.6
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 8.9e-302 1040.8 1365 47.3
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.5e-301 1040.0 1258 48.7
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 6.9e-278 961.4 1343 44.4
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 7.6e-277 958.0 1356 44.2
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.4e-275 953.7 902 61.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.9e-275 953.4 1094 50.4
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 2.1e-274 949.9 911 59.2
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.1e-262 911.0 1301 43.6
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.7e-237 825.1 807 58.5
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 3.6e-226 789.6 914 50.4
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 3.8e-204 716.5 841 50.3
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 6.1e-202 709.1 683 58.4
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.8e-193 679.1 711 55.4
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.1e-190 671.8 728 52.9
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.2e-183 647.5 775 49.7
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 3.5e-181 640.2 639 56.3
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.2e-174 617.1 825 44.6
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.8e-162 577.4 1356 33.8
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 9.0e-161 572.4 479 61.2
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 5.4e-158 563.1 1318 33.1
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 7.1e-158 562.8 602 51.0
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.7e-143 515.0 640 45.8
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.3e-140 504.6 1328 29.8
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 1.1e-139 502.3 506 54.5
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 5.9e-136 490.0 359 68.2
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.1e-134 485.7 1122 31.0
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 2.4e-129 468.0 1135 32.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.4e-121 442.2 359 60.2
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.1e-115 422.5 485 50.7
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.7e-115 419.5 417 51.6
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.7e-101 374.0 351 59.8
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.6e-93 347.8 673 35.4
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 6.1e-93 347.1 347 51.6
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.3e-82 312.8 326 49.1
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 6.8e-76 290.4 237 62.0
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.6e-72 277.7 306 51.6
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.9e-66 258.5 357 49.3
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.7e-58 232.6 232 57.8
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 7.1e-57 227.3 327 44.3
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 2.0e-51 209.1 301 45.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.3e-47 196.4 271 44.3
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.6e-45 188.3 265 40.8
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.2e-41 174.9 121 71.1
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 5.3e-36 157.9 366 31.1
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.2e-33 148.7 504 26.6
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.7e-29 135.2 198 43.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.5e-27 128.3 159 48.4
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.1e-22 113.6 421 22.6
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.9e-22 112.8 212 39.6
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.6e-21 109.8 94 56.4
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.7e-16 92.4 166 37.3
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 8.2e-13 80.9 86 52.3
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.1e-12 78.6 421 26.1
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.5e-11 76.6 70 58.6
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 4.7e-08 65.1 67 49.3
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.0e-07 63.9 418 22.5


User provided reference genes

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