Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 1.2e-48 196.1 94 100.0
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 6.9e-47 190.3 94 97.9
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 94.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 94.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 3.8e-45 184.5 93 95.7
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 93.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-44 181.8 94 93.6
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 94.7
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 94.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 93.6
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 93.6
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 93.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 93.6
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 93.6
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 93.6
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 91.5
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-42 175.6 94 91.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.3e-42 175.3 92 89.1
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.0e-42 174.9 94 90.4
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.5e-41 171.8 94 90.4
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.5e-41 171.8 94 89.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 89.4
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 89.4
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 89.4
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 89.4
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.6e-41 170.6 94 90.4
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.6e-41 169.9 94 87.2
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.6e-40 169.1 94 88.3
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.2e-40 167.2 94 87.2
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-38 162.2 94 84.0
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-38 162.2 94 85.1
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.6e-38 161.8 82 93.9
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 3.4e-38 161.4 83 92.8
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.6e-38 160.2 94 85.1
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 7.6e-38 160.2 81 95.1
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.3e-37 159.5 84 89.3
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 2.2e-37 158.7 82 92.7
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 85.1
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 85.1
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-37 157.9 94 83.0
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 4.9e-37 157.5 82 87.8
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 6.4e-37 157.1 83 90.4
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 8.4e-37 156.8 94 85.1
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-36 156.0 94 83.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.2e-36 154.8 81 92.6
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.1e-35 152.1 77 93.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 2.7e-35 151.8 79 89.9
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 7.9e-35 150.2 94 78.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.0e-34 149.8 81 90.1
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.3e-34 149.4 84 84.5
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.3e-32 142.9 79 86.1
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-32 142.5 74 91.9
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 3.7e-32 141.4 79 86.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.7e-32 141.4 79 83.5
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-31 139.0 72 91.7
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.2e-30 136.3 94 76.6
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.4e-30 134.8 72 88.9
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.4e-30 134.8 66 97.0
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.4e-30 134.8 86 74.4
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 5.8e-30 134.0 69 92.8
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 5.8e-30 134.0 69 92.8
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 8.4e-29 130.2 94 71.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-28 129.4 74 83.8
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.7e-27 125.2 67 91.0
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.9e-27 123.6 63 95.2
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-25 119.4 58 96.6
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-25 119.4 58 96.6
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-25 119.4 58 96.6
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 1.5e-25 119.4 64 92.2
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 4.3e-25 117.9 73 80.8
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 7.4e-25 117.1 63 88.9
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.3e-24 116.3 61 90.2
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.1e-23 113.2 83 71.1
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 9.0e-23 110.2 75 69.3
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 7.6e-22 107.1 53 94.3
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-21 105.1 59 88.1
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 4.2e-20 101.3 62 83.9
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 7.1e-20 100.5 59 83.1
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.2e-19 99.8 62 80.6
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 4.6e-19 97.8 61 78.7
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.0e-19 97.4 49 93.9
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.3e-18 96.3 55 83.6
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.3e-18 95.5 82 64.6
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 8.7e-18 93.6 50 86.0
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.1e-17 93.2 52 82.7
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 4.3e-17 91.3 44 95.5
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 4.3e-17 91.3 44 97.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.7e-17 90.1 46 89.1
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 1.6e-16 89.4 77 63.6
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 2.2e-16 89.0 44 93.2
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 2.8e-16 88.6 41 100.0
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.1e-15 84.7 43 90.7
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 3.4e-14 81.6 70 62.9
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.7e-13 79.3 84 52.4
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.5e-12 75.5 37 94.6
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.5e-12 75.5 37 91.9
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 9.4e-12 73.6 41 85.4
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 9.4e-12 73.6 44 81.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-10 69.7 35 94.3
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 6.7e-10 67.4 32 93.8
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.7e-09 63.5 30 93.3
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 8.2e-08 60.5 89 40.4
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 2.0e-06 55.8 46 54.3


User provided reference genes

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