Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 1.6e-62 242.7 131 100.0
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 6.0e-49 197.6 130 83.1
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 6.0e-49 197.6 128 87.5
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 2.5e-47 192.2 126 81.7
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 3.3e-47 191.8 131 80.2
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 6.2e-46 187.6 129 80.6
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 1.4e-45 186.4 129 76.7
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 2.4e-45 185.7 129 81.4
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 3.1e-45 185.3 129 80.6
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 3.1e-45 185.3 129 76.0
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 4.0e-45 184.9 129 78.3
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 4.0e-45 184.9 129 78.3
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 6.8e-45 184.1 128 76.6
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 6.8e-45 184.1 128 76.6
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 2.0e-44 182.6 129 76.0
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 2.0e-44 182.6 129 79.1
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 3.4e-44 181.8 129 79.8
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 7.6e-44 180.6 128 75.8
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 2.2e-43 179.1 127 75.6
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 3.8e-43 178.3 131 78.6
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 4.9e-43 177.9 127 76.4
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 6.4e-43 177.6 127 76.4
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 6.4e-43 177.6 127 76.4
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 8.4e-43 177.2 129 76.7
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 8.4e-43 177.2 128 75.8
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 2.4e-42 175.6 135 71.1
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 2.4e-42 175.6 127 73.2
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 4.2e-42 174.9 128 73.4
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 4.2e-42 174.9 127 74.8
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 5.4e-42 174.5 130 73.8
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 9.3e-42 173.7 127 74.0
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 1.6e-41 172.9 127 74.8
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 1.6e-41 172.9 127 72.4
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 2.1e-41 172.6 129 71.3
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 3.5e-41 171.8 127 73.2
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 3.5e-41 171.8 127 74.0
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 3.5e-41 171.8 129 71.3
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 4.6e-41 171.4 127 74.0
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 6.0e-41 171.0 127 74.8
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 7.8e-41 170.6 129 73.6
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 1.0e-40 170.2 126 73.0
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 1.0e-40 170.2 125 73.6
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 1.0e-40 170.2 127 70.9
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 1.7e-40 169.5 137 67.2
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 1.7e-40 169.5 127 72.4
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 1.7e-40 169.5 127 73.2
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 1.7e-40 169.5 139 70.5
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 2.3e-40 169.1 126 77.8
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 5.1e-40 167.9 127 70.9
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 5.1e-40 167.9 131 71.0
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 5.1e-40 167.9 129 66.7
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 6.6e-40 167.5 127 71.7
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 8.7e-40 167.2 127 70.9
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 8.7e-40 167.2 131 71.0
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 1.5e-39 166.4 124 70.2
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 1.9e-39 166.0 130 72.3
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 1.9e-39 166.0 127 70.1
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 1.9e-39 166.0 127 70.1
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 1.9e-39 166.0 131 70.2
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 4.3e-39 164.9 127 70.9
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 5.6e-39 164.5 123 71.5
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 7.3e-39 164.1 127 70.1
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 1.3e-38 163.3 127 69.3
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 1.3e-38 163.3 127 68.5
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 1.3e-38 163.3 128 68.8
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 1.3e-38 163.3 145 62.8
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 1.6e-38 162.9 127 67.7
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 1.6e-38 162.9 128 67.2
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 1.6e-38 162.9 127 70.9
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 2.8e-38 162.2 128 69.5
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 2.8e-38 162.2 125 72.0
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 3.6e-38 161.8 124 70.2
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 4.8e-38 161.4 127 68.5
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 4.8e-38 161.4 127 68.5
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 4.8e-38 161.4 103 77.7
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 6.2e-38 161.0 131 66.4
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 1.4e-37 159.8 128 65.6
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 3.1e-37 158.7 128 74.2
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 1.5e-36 156.4 129 60.5
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 1.4e-34 149.8 109 74.3
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 1.4e-34 149.8 128 64.8
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 5.4e-34 147.9 128 60.2
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 5.4e-34 147.9 122 63.1
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 7.1e-34 147.5 106 66.0
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 1.2e-33 146.7 126 64.3
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 1.6e-30 136.3 126 59.5
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 1.7e-27 126.3 127 59.1
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 4.2e-26 121.7 89 73.0
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 5.5e-26 121.3 87 79.3
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 2.7e-25 119.0 88 73.9
CsaV3_2G018110 Cucumis sativus L. HOM05D007422 ORTHO05D009333 6.0e-25 117.9 77 77.9
GSVIVG01026559001 Vitis vinifera HOM05D007422 ORTHO05D009333 6.0e-25 117.9 74 82.4
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 1.3e-24 116.7 100 55.0
EL10Ac6g15266 Beta vulgaris HOM05D007422 ORTHO05D009333 3.9e-24 115.2 72 79.2
Eucgr.H04923 Eucalyptus grandis HOM05D007422 ORTHO05D009333 6.7e-24 114.4 69 84.1
Dinv05702 Davidia involucrata HOM05D007422 ORTHO05D009333 6.2e-22 107.8 66 84.8
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 1.8e-21 106.3 127 52.0
AUR62017925 Chenopodium quinoa HOM05D007422 ORTHO05D009333 2.4e-21 105.9 86 67.4
Sed0005171 Sechium edule HOM05D007422 ORTHO05D009333 7.1e-18 94.4 113 54.0
BcaB02g11285 Brassica carinata HOM05D007422 ORTHO05D009333 6.7e-16 87.8 116 47.4
FAN23G3068 Fragaria x ananassa HOM05D007422 ORTHO05D009333 2.5e-15 85.9 56 89.3
RcHm_v2.0_Chr2g0118341 Rosa chinensis HOM05D007422 ORTHO05D009333 4.8e-14 81.6 45 93.3
Pp3c13_2330 Physcomitrium patens HOM05D007422 ORTHO05D009333 8.4e-11 70.9 69 56.5
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 2.7e-09 65.9 60 65.0
Sabra05G0049000 Salix brachista HOM05D007422 ORTHO05D009333 2.7e-09 65.9 50 72.0
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 1.9e-07 59.7 112 32.1
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 3.3e-07 58.9 112 31.2
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 3.3e-07 58.9 112 31.2
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 3.3e-07 58.9 112 31.2
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 3.3e-07 58.9 112 31.2
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 4.3e-07 58.5 112 30.4
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 4.3e-07 58.5 112 30.4
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 4.3e-07 58.5 112 30.4
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 9.7e-07 57.4 113 30.1
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 9.7e-07 57.4 112 30.4
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 1.3e-06 57.0 112 30.4
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 1.6e-06 56.6 115 31.3
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 1.6e-06 56.6 122 31.1
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 2.2e-06 56.2 110 30.0
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 2.2e-06 56.2 117 30.8
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.8e-06 55.8 112 30.4
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 2.8e-06 55.8 112 30.4
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 2.8e-06 55.8 114 30.7
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 3.7e-06 55.5 112 29.5
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 31.3
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 3.7e-06 55.5 115 31.3
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 3.7e-06 55.5 115 31.3
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 3.7e-06 55.5 115 31.3
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 3.7e-06 55.5 115 31.3
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 31.3
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 29.6
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 31.3
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 3.7e-06 55.5 99 29.3
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 3.7e-06 55.5 99 29.3
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 30.4
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 3.7e-06 55.5 115 31.3
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 4.8e-06 55.1 115 30.4
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 4.8e-06 55.1 115 30.4
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 4.8e-06 55.1 115 30.4
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 110 30.0
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 4.8e-06 55.1 110 30.0
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 4.8e-06 55.1 115 30.4
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 6.3e-06 54.7 115 29.6
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 6.3e-06 54.7 113 29.2
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 6.3e-06 54.7 110 29.1
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 8.2e-06 54.3 115 29.6
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 8.2e-06 54.3 117 29.9
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 8.2e-06 54.3 115 30.4
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 8.2e-06 54.3 115 29.6
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 8.2e-06 54.3 115 29.6


User provided reference genes

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