Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0116711 Rosa chinensis HOM05D000681 ORTHO05D050339 1.2e-71 273.1 137 100.0
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 4.8e-41 171.4 291 41.6
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 4.8e-41 171.4 291 41.6
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 4.8e-41 171.4 291 41.6
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 4.8e-41 171.4 291 41.6
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 4.8e-41 171.4 291 41.6
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 2.1e-36 156.0 291 39.2
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 2.7e-36 155.6 291 38.8
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 2.3e-35 152.5 291 38.8
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 3.0e-35 152.1 291 38.5
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 6.7e-35 151.0 291 38.1
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 1.5e-34 149.8 291 38.5
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.5e-34 149.8 291 37.8
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 2.0e-34 149.4 291 37.5
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 2.0e-34 149.4 291 38.1
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 2.0e-34 149.4 290 38.3
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 2.0e-34 149.4 291 37.8
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 2.6e-34 149.1 291 38.1
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 3.3e-34 148.7 291 37.8
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 5.7e-34 147.9 291 37.8
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 5.7e-34 147.9 291 37.8
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 5.7e-34 147.9 291 37.8
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 5.7e-34 147.9 291 37.1
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 7.4e-34 147.5 291 37.1
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 7.4e-34 147.5 291 37.1
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 7.4e-34 147.5 291 37.5
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 9.7e-34 147.1 296 37.5
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 9.7e-34 147.1 291 37.5
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 9.7e-34 147.1 291 37.5
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 9.7e-34 147.1 291 36.8
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 9.7e-34 147.1 291 36.8
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.2e-33 146.0 291 37.5
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 2.2e-33 146.0 291 37.5
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 2.8e-33 145.6 291 37.5
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 2.8e-33 145.6 291 37.5
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 2.8e-33 145.6 291 36.4
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 4.8e-33 144.8 291 37.5
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 4.8e-33 144.8 291 37.1
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 4.8e-33 144.8 291 37.5
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 4.8e-33 144.8 291 36.8
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 6.3e-33 144.4 291 36.4
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 6.3e-33 144.4 291 36.8
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 8.2e-33 144.1 291 37.1
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 8.2e-33 144.1 291 36.8
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 8.2e-33 144.1 291 37.1
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 1.1e-32 143.7 291 37.1
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 1.1e-32 143.7 291 36.4
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 37.1
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 37.1
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 37.1
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 37.1
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 37.1
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 1.4e-32 143.3 291 36.4
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 1.8e-32 142.9 291 37.5
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 1.8e-32 142.9 291 36.8
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 1.8e-32 142.9 291 36.4
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.8e-32 142.9 291 37.1
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 2.4e-32 142.5 291 36.8
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 2.4e-32 142.5 291 36.8
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 3.1e-32 142.1 291 36.8
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 4.1e-32 141.7 291 36.4
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 4.1e-32 141.7 279 36.9
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 4.1e-32 141.7 291 36.1
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 5.3e-32 141.4 291 36.4
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 5.3e-32 141.4 291 36.4
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 7.0e-32 141.0 291 36.1
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 9.1e-32 140.6 291 36.8
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 9.1e-32 140.6 291 36.8
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 9.1e-32 140.6 291 36.1
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 9.1e-32 140.6 291 36.1
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 1.2e-31 140.2 291 36.1
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 1.2e-31 140.2 291 36.1
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 1.2e-31 140.2 291 36.4
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 1.2e-31 140.2 291 36.1
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 1.2e-31 140.2 291 36.4
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 1.5e-31 139.8 291 36.4
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 1.5e-31 139.8 291 36.8
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 2.0e-31 139.4 291 36.1
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 2.0e-31 139.4 291 36.1
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 2.0e-31 139.4 291 36.1
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 2.0e-31 139.4 291 36.1
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 2.0e-31 139.4 291 36.1
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 2.6e-31 139.0 291 36.4
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 3.5e-31 138.7 291 35.7
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 3.5e-31 138.7 291 35.4
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 3.5e-31 138.7 291 35.7
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 3.5e-31 138.7 291 35.7
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 3.5e-31 138.7 291 35.7
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 4.5e-31 138.3 291 35.7
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 4.5e-31 138.3 291 35.7
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 4.5e-31 138.3 291 36.4
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 5.9e-31 137.9 291 36.1
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 5.9e-31 137.9 282 36.5
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 7.7e-31 137.5 291 35.7
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 7.7e-31 137.5 291 36.4
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 7.7e-31 137.5 291 35.7
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 7.7e-31 137.5 291 35.7
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 1.0e-30 137.1 291 35.7
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 1.3e-30 136.7 291 36.1
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 1.3e-30 136.7 291 35.4
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 1.3e-30 136.7 291 35.7
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 1.3e-30 136.7 291 35.7
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 1.3e-30 136.7 291 35.7
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 1.7e-30 136.3 291 35.7
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 1.7e-30 136.3 291 35.4
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 2.2e-30 136.0 302 35.4
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 2.9e-30 135.6 291 35.7
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 3.8e-30 135.2 291 34.7
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 3.8e-30 135.2 291 35.7
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 6.5e-30 134.4 291 35.4
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 6.5e-30 134.4 300 34.7
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 8.5e-30 134.0 291 35.4
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 8.5e-30 134.0 319 33.5
COL.COLO4_11005 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.1e-29 133.7 103 68.9
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 1.1e-29 133.7 82 82.9
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 4.2e-29 131.7 291 33.3
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 4.2e-29 131.7 291 34.0
FAN28G0951 Fragaria x ananassa HOM05D000681 ORTHO05D005458 5.5e-29 131.3 68 94.1
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 7.2e-29 131.0 296 35.8
SEGI_19176 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 7.2e-29 131.0 94 69.1
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 9.4e-29 130.6 302 33.1
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 1.6e-28 129.8 72 88.9
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 6.1e-28 127.9 291 33.7
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 6.1e-28 127.9 291 34.0
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 8.0e-28 127.5 292 33.9
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 1.0e-27 127.1 292 32.9
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 1.8e-27 126.3 291 33.3
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 2.3e-27 125.9 292 33.2
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 2.3e-27 125.9 292 33.2
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 3.0e-27 125.6 291 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 8.8e-27 124.0 292 32.9
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 8.8e-27 124.0 291 33.7
Ah.06g189110 Amaranthus hybridus HOM05D000681 ORTHO05D005458 4.4e-26 121.7 82 72.0
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 7.4e-26 120.9 292 32.2
Pp3c21_9610 Physcomitrium patens HOM05D000681 ORTHO05D005458 1.4e-24 116.7 265 33.6
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 5.9e-23 111.3 291 31.3
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 1.9e-21 106.3 292 29.1
MD01G1020500 Malus domestica HOM05D000681 ORTHO05D005458 4.7e-20 101.7 60 83.3
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 1.8e-19 99.8 291 28.9
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 9.7e-18 94.0 265 30.6
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 5.3e-16 88.2 286 30.4
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 2.0e-15 86.3 82 54.9
FAN28G1262 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.7e-15 85.9 44 95.5
Pp3c9_3480 Physcomitrium patens HOM05D000681 ORTHO05D050339 3.5e-15 85.5 68 60.3
COL.COLO4_11004 Corchorus olitorius HOM05D000681 ORTHO05D005458 2.2e-14 82.8 58 72.4
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 6.5e-14 81.3 82 48.8
SEGI_28136 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 5.5e-13 78.2 55 70.9
AUR62007005 Chenopodium quinoa HOM05D000681 ORTHO05D044033 1.2e-12 77.0 55 70.9
AUR62005304 Chenopodium quinoa HOM05D000681 ORTHO05D044033 2.7e-12 75.9 44 84.1
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 4.7e-12 75.1 82 43.9
RcHm_v2.0_Chr2g0116821 Rosa chinensis HOM05D000681 ORTHO05D011601 1.6e-07 60.1 40 67.5
Cpa.g.c37838 Carica papaya HOM05D000681 ORTHO05D005458 3.5e-07 58.9 41 73.2
Ca_29440_v3 Cicer arietinum L. HOM05D000681 ORTHO05D148758 1.0e-06 57.4 57 47.4
RcHm_v2.0_Chr2g0116831 Rosa chinensis HOM05D000681 ORTHO05D005458 1.0e-06 57.4 41 70.7
QL02p029270 Quercus lobata HOM05D000681 ORTHO05D007906 3.8e-06 55.5 132 26.5


User provided reference genes

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