Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.6e-308 1060.8 566 100.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.1e-223 777.7 573 75.4
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.1e-214 748.0 552 73.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.1e-208 730.3 555 71.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-207 726.5 559 71.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-203 713.8 555 70.5
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 5.5e-192 674.9 510 69.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.2e-170 604.0 529 61.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.1e-153 545.4 494 57.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-150 537.7 490 58.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 5.1e-145 518.8 494 56.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.3e-144 515.0 506 55.7
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 4.7e-143 512.3 506 55.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 8.9e-142 508.1 536 52.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.2e-139 499.2 495 54.9
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.1e-138 496.9 490 54.3
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.8e-138 495.0 442 57.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 7.3e-136 488.4 500 53.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.3e-135 487.6 502 53.0
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.6e-135 486.1 499 53.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 4.8e-135 485.7 498 54.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 4.8e-135 485.7 498 54.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.2e-135 485.3 500 53.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.1e-134 483.0 500 52.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.4e-133 479.2 555 49.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.7e-132 477.2 528 50.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.2e-131 472.6 421 59.4
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.2e-131 472.6 491 53.6
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.1e-130 470.3 500 51.4
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.3e-129 467.6 401 68.8
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.9e-129 466.1 501 52.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-127 459.5 359 72.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.4e-126 456.8 497 50.9
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.2e-125 454.5 508 49.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.5e-125 454.1 490 52.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.3e-124 451.1 513 48.5
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.8e-124 449.5 508 49.2
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.8e-124 449.5 496 49.2
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 4.9e-124 449.1 482 50.4
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.1e-123 448.0 505 51.5
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.2e-123 446.0 461 52.7
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 7.1e-123 445.3 490 50.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 9.3e-123 444.9 465 53.1
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.2e-122 444.5 525 47.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.6e-122 444.1 495 50.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.5e-122 443.0 511 48.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.0e-121 441.4 503 47.9
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.3e-121 441.0 488 50.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-121 440.7 421 54.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 3.0e-121 439.9 516 48.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.1e-121 439.1 489 49.3
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.1e-120 438.0 511 47.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 4.3e-120 436.0 503 48.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.3e-120 436.0 434 53.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 7.4e-120 435.3 436 54.6
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 9.6e-120 434.9 515 46.6
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.6e-119 434.1 491 49.5
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.6e-119 434.1 504 48.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.1e-119 433.7 492 49.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.1e-118 431.4 481 47.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.9e-118 428.7 471 50.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.6e-117 426.8 470 49.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.6e-117 426.8 543 45.9
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.4e-117 426.4 502 47.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.0e-116 424.9 498 49.6
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-115 421.4 489 48.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.2e-115 419.9 547 45.9
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.1e-114 417.2 513 47.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 4.6e-114 416.0 513 46.8
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.6e-114 416.0 507 48.1
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.0e-113 414.8 505 47.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.5e-112 411.0 506 47.2
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.5e-112 410.2 422 50.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.3e-112 409.8 505 46.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 9.6e-112 408.3 524 44.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.8e-110 404.1 468 48.3
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.4e-110 403.7 416 52.4
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.2e-109 401.4 544 43.6
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.6e-109 400.2 523 45.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.9e-108 396.7 536 43.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.9e-108 396.7 520 46.7
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.6e-106 389.8 470 46.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.1e-106 389.0 523 43.8
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.3e-105 387.1 512 43.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.3e-103 381.3 508 46.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 3.7e-103 379.8 469 46.3
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.4e-102 377.9 506 42.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.9e-102 375.6 484 45.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.2e-100 370.5 359 53.5
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.6e-98 362.8 489 45.0
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.3e-96 356.7 508 42.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.9e-93 345.9 464 41.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.1e-91 341.7 481 42.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.4e-91 341.3 497 41.2
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.6e-90 337.8 468 44.0
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.6e-90 337.8 375 53.1
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.1e-90 337.4 462 43.1
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 6.1e-90 335.9 516 39.3
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.4e-89 334.7 511 39.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.9e-89 333.2 512 39.5
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-88 331.6 512 39.3
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-88 331.6 512 39.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-86 324.7 497 40.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.3e-86 322.8 424 45.5
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.6e-82 310.1 507 38.9
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.7e-79 300.1 231 62.3
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.4e-78 298.1 486 39.7
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 5.3e-78 296.2 308 52.6
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.5e-77 293.5 496 38.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.7e-76 291.2 502 37.8
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 7.2e-75 285.8 494 36.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.1e-67 261.9 336 47.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-64 251.9 224 64.3
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.8e-63 247.3 329 46.2
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.9e-63 246.5 338 46.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.6e-60 236.1 466 35.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.6e-60 236.1 226 54.4
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 5.6e-59 233.0 172 64.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.1e-58 231.1 301 47.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.8e-53 212.6 240 46.2
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.1e-46 192.2 351 38.2
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 3.2e-46 190.7 268 39.9
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 1.3e-44 185.3 140 61.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.5e-43 181.0 284 38.0
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.2e-42 178.7 316 36.7
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-41 174.9 284 37.0
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 3.5e-37 160.6 300 35.0
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.1e-33 149.1 274 35.4
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.4e-32 144.1 231 36.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.9e-31 141.0 235 37.9
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.0e-28 132.5 130 50.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.3e-28 132.1 87 64.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.3e-28 132.1 87 64.4
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.1e-22 109.8 119 52.1
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.6e-21 107.1 295 26.4
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.1e-20 103.6 140 55.7
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-20 103.2 271 28.0
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.3e-19 100.9 138 55.8
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.6e-19 100.1 154 42.2
FAN28G1315 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-17 95.9 137 46.7
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-15 89.0 261 27.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-15 89.0 263 27.4
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-15 89.0 263 27.4
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.3e-15 89.0 263 27.4
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 2.2e-15 88.2 256 25.8
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 2.2e-15 88.2 256 25.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-08 64.7 55 49.1


User provided reference genes

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