Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 7.8e-48 193.4 90 100.0
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 4.9e-42 174.1 89 91.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 1.4e-41 172.6 89 89.9
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.4e-41 172.6 89 89.9
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.4e-41 172.6 89 89.9
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.4e-41 172.6 89 89.9
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 7.0e-41 170.2 88 89.8
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 3.5e-40 167.9 89 86.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 1.0e-39 166.4 89 85.4
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 1.0e-39 166.4 89 85.4
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.0e-39 164.9 89 84.3
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.0e-39 164.9 89 84.3
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 6.6e-39 163.7 89 85.4
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 8.6e-39 163.3 89 85.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 1.5e-38 162.5 88 85.2
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 1.5e-38 162.5 89 84.3
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 83.1
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 1.9e-38 162.2 89 84.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.5e-38 161.8 89 84.3
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.5e-38 161.8 89 83.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 2.5e-38 161.8 89 84.3
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 2.5e-38 161.8 89 84.3
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 2.5e-38 161.8 89 84.3
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.3e-38 161.4 89 84.3
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 3.3e-38 161.4 88 85.2
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 3.3e-38 161.4 89 83.1
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 4.3e-38 161.0 89 83.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 4.3e-38 161.0 89 83.1
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 5.6e-38 160.6 89 83.1
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 5.6e-38 160.6 89 83.1
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 7.3e-38 160.2 89 83.1
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 7.3e-38 160.2 89 83.1
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 7.3e-38 160.2 89 83.1
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 7.3e-38 160.2 89 83.1
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 9.5e-38 159.8 89 80.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 9.5e-38 159.8 88 84.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 9.5e-38 159.8 89 82.0
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 1.2e-37 159.5 89 82.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 1.2e-37 159.5 89 83.1
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 1.2e-37 159.5 89 83.1
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 1.2e-37 159.5 89 82.0
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 1.6e-37 159.1 89 83.1
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.6e-37 159.1 89 82.0
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 1.6e-37 159.1 89 83.1
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 2.1e-37 158.7 89 83.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 2.1e-37 158.7 89 83.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 2.1e-37 158.7 88 83.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 2.8e-37 158.3 89 83.1
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.8e-37 158.3 89 82.0
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 2.8e-37 158.3 89 82.0
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 2.8e-37 158.3 89 82.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 2.8e-37 158.3 89 82.0
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 3.6e-37 157.9 89 82.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 3.6e-37 157.9 89 82.0
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 4.7e-37 157.5 89 79.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 4.7e-37 157.5 89 80.9
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 6.2e-37 157.1 89 82.0
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.2e-37 157.1 89 80.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.0e-37 156.8 89 82.0
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.0e-37 156.8 89 82.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 8.0e-37 156.8 89 80.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.0e-37 156.8 89 80.9
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.1e-36 156.4 89 80.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 3.1e-36 154.8 89 80.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.1e-36 154.8 89 79.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 3.1e-36 154.8 89 80.9
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 4.0e-36 154.5 88 81.8
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 5.2e-36 154.1 88 81.8
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 6.8e-36 153.7 89 78.7
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 6.8e-36 153.7 89 78.7
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 8.9e-36 153.3 89 78.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 8.9e-36 153.3 89 78.7
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 1.2e-35 152.9 89 79.8
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 1.2e-35 152.9 89 79.8
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 1.5e-35 152.5 88 80.7
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 1.5e-35 152.5 88 80.7
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 1.5e-35 152.5 88 80.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 1.5e-35 152.5 89 79.8
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 2.0e-35 152.1 89 79.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 2.6e-35 151.8 89 79.8
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 4.4e-35 151.0 88 80.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 4.4e-35 151.0 88 80.7
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 4.4e-35 151.0 88 80.7
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 4.4e-35 151.0 88 80.7
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 4.4e-35 151.0 88 80.7
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 4.4e-35 151.0 89 79.8
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 7.5e-35 150.2 94 77.7
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 9.8e-35 149.8 88 79.5
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 1.3e-34 149.4 89 77.5
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 2.9e-34 148.3 89 75.3
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 3.7e-34 147.9 89 76.4
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 8.3e-34 146.7 89 76.4
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 4.1e-33 144.4 84 73.8
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 1.2e-32 142.9 89 75.3
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 2.7e-32 141.7 89 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.7e-31 139.0 89 73.0
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 8.6e-31 136.7 89 71.9
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 6.6e-23 110.5 88 54.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 8.6e-23 110.2 89 64.0
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.2e-13 79.7 86 45.3
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.8e-10 68.2 67 50.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 4.3e-06 54.7 73 37.0


User provided reference genes

Program Settings